Hb_004785_060

Information

Type -
Description -
Location Contig4785: 71692-72876
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07060g
description POPTRDRAFT_551335; F-box family protein
nr
ID XP_012066043.1
description PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
swissprot
ID O49279
description SKP1-interacting partner 15 OS=Arabidopsis thaliana GN=SKIP15 PE=1 SV=1
trembl
ID A0A067LER7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25196 PE=4 SV=1
Gene Ontology
ID GO:0005634
description skp1-interacting partner 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44552: 70924-71259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_060 0.0 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
2 Hb_000859_060 0.0567135408 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
3 Hb_000000_370 0.0706068706 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
4 Hb_012807_050 0.0725652685 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
5 Hb_001021_170 0.074673088 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
6 Hb_004355_020 0.0826518112 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
7 Hb_000181_070 0.083061047 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000125_170 0.0856551102 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
9 Hb_000926_330 0.0868096058 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
10 Hb_093084_060 0.0868453317 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
11 Hb_004837_040 0.0872303002 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
12 Hb_001005_190 0.091122731 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
13 Hb_007416_180 0.0915351522 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_011218_040 0.0927897905 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
15 Hb_000227_240 0.0935075538 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
16 Hb_001728_100 0.0935165983 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
17 Hb_008511_090 0.0935356316 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
18 Hb_009767_100 0.0938472851 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
19 Hb_005993_020 0.0939856293 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
20 Hb_015807_070 0.0941668725 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]

Gene co-expression network

sample Hb_004785_060 Hb_004785_060 Hb_000859_060 Hb_000859_060 Hb_004785_060--Hb_000859_060 Hb_000000_370 Hb_000000_370 Hb_004785_060--Hb_000000_370 Hb_012807_050 Hb_012807_050 Hb_004785_060--Hb_012807_050 Hb_001021_170 Hb_001021_170 Hb_004785_060--Hb_001021_170 Hb_004355_020 Hb_004355_020 Hb_004785_060--Hb_004355_020 Hb_000181_070 Hb_000181_070 Hb_004785_060--Hb_000181_070 Hb_000085_100 Hb_000085_100 Hb_000859_060--Hb_000085_100 Hb_009767_100 Hb_009767_100 Hb_000859_060--Hb_009767_100 Hb_000859_060--Hb_000000_370 Hb_001178_140 Hb_001178_140 Hb_000859_060--Hb_001178_140 Hb_000859_060--Hb_004355_020 Hb_004837_040 Hb_004837_040 Hb_000000_370--Hb_004837_040 Hb_000000_370--Hb_000085_100 Hb_000062_250 Hb_000062_250 Hb_000000_370--Hb_000062_250 Hb_000000_370--Hb_012807_050 Hb_000229_020 Hb_000229_020 Hb_012807_050--Hb_000229_020 Hb_010172_090 Hb_010172_090 Hb_012807_050--Hb_010172_090 Hb_076693_020 Hb_076693_020 Hb_012807_050--Hb_076693_020 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050 Hb_015807_070 Hb_015807_070 Hb_001021_170--Hb_015807_070 Hb_001021_170--Hb_004355_020 Hb_000768_040 Hb_000768_040 Hb_001021_170--Hb_000768_040 Hb_045793_010 Hb_045793_010 Hb_001021_170--Hb_045793_010 Hb_006847_040 Hb_006847_040 Hb_001021_170--Hb_006847_040 Hb_007416_180 Hb_007416_180 Hb_001021_170--Hb_007416_180 Hb_007254_070 Hb_007254_070 Hb_004355_020--Hb_007254_070 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_000629_010 Hb_000629_010 Hb_004355_020--Hb_000629_010 Hb_011218_040 Hb_011218_040 Hb_004355_020--Hb_011218_040 Hb_006788_020 Hb_006788_020 Hb_004355_020--Hb_006788_020 Hb_000125_170 Hb_000125_170 Hb_000181_070--Hb_000125_170 Hb_000181_070--Hb_007416_180 Hb_000512_060 Hb_000512_060 Hb_000181_070--Hb_000512_060 Hb_000230_120 Hb_000230_120 Hb_000181_070--Hb_000230_120 Hb_031527_040 Hb_031527_040 Hb_000181_070--Hb_031527_040 Hb_007532_030 Hb_007532_030 Hb_000181_070--Hb_007532_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.9424 50.1004 11.2732 20.3493 33.5712 34.8768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.1617 27.5704 43.0638 25.1186 11.2562

CAGE analysis