Hb_004785_120

Information

Type -
Description -
Location Contig4785: 140218-141750
Sequence    

Annotation

kegg
ID tcc:TCM_035510
description Receptor protein kinase 1
nr
ID XP_007019455.1
description Receptor protein kinase 1 [Theobroma cacao]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID A0A061FHA1
description Serine/threonine-protein kinase OS=Theobroma cacao GN=TCM_035510 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_120 0.0 - - Receptor protein kinase 1 [Theobroma cacao]
2 Hb_055147_010 0.0805050105 - - thioredoxin H-type 7 [Hevea brasiliensis]
3 Hb_001021_110 0.0947858231 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
4 Hb_000996_200 0.1188052129 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
5 Hb_012404_050 0.1273806101 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
6 Hb_012545_080 0.1355599433 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
7 Hb_000110_330 0.1546493789 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
8 Hb_005545_090 0.1570459851 - - -
9 Hb_005306_040 0.1599319808 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_002615_010 0.1640390842 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
11 Hb_005357_270 0.1650708938 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
12 Hb_002481_070 0.1703351697 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
13 Hb_157980_010 0.1740112753 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_000523_060 0.1747431182 - - -
15 Hb_002205_260 0.179028077 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
16 Hb_000862_060 0.1799485819 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002391_020 0.1813524257 transcription factor TF Family: NAC PREDICTED: putative NAC domain-containing protein 94 [Jatropha curcas]
18 Hb_001300_120 0.1823355399 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
19 Hb_006395_020 0.1823492127 - - hypothetical protein RCOM_0725510 [Ricinus communis]
20 Hb_006634_080 0.1837319123 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]

Gene co-expression network

sample Hb_004785_120 Hb_004785_120 Hb_055147_010 Hb_055147_010 Hb_004785_120--Hb_055147_010 Hb_001021_110 Hb_001021_110 Hb_004785_120--Hb_001021_110 Hb_000996_200 Hb_000996_200 Hb_004785_120--Hb_000996_200 Hb_012404_050 Hb_012404_050 Hb_004785_120--Hb_012404_050 Hb_012545_080 Hb_012545_080 Hb_004785_120--Hb_012545_080 Hb_000110_330 Hb_000110_330 Hb_004785_120--Hb_000110_330 Hb_055147_010--Hb_012404_050 Hb_000720_110 Hb_000720_110 Hb_055147_010--Hb_000720_110 Hb_055147_010--Hb_000996_200 Hb_055147_010--Hb_000110_330 Hb_000862_060 Hb_000862_060 Hb_055147_010--Hb_000862_060 Hb_000523_060 Hb_000523_060 Hb_001021_110--Hb_000523_060 Hb_025030_010 Hb_025030_010 Hb_001021_110--Hb_025030_010 Hb_001021_110--Hb_000996_200 Hb_005545_090 Hb_005545_090 Hb_001021_110--Hb_005545_090 Hb_002481_070 Hb_002481_070 Hb_001021_110--Hb_002481_070 Hb_000996_200--Hb_012545_080 Hb_005357_270 Hb_005357_270 Hb_000996_200--Hb_005357_270 Hb_006634_080 Hb_006634_080 Hb_000996_200--Hb_006634_080 Hb_157980_010 Hb_157980_010 Hb_000996_200--Hb_157980_010 Hb_004459_110 Hb_004459_110 Hb_000996_200--Hb_004459_110 Hb_012404_050--Hb_000110_330 Hb_012404_050--Hb_012545_080 Hb_133845_010 Hb_133845_010 Hb_012404_050--Hb_133845_010 Hb_007407_010 Hb_007407_010 Hb_012404_050--Hb_007407_010 Hb_012545_080--Hb_005357_270 Hb_012545_080--Hb_000110_330 Hb_009683_010 Hb_009683_010 Hb_012545_080--Hb_009683_010 Hb_012545_080--Hb_007407_010 Hb_041145_010 Hb_041145_010 Hb_000110_330--Hb_041145_010 Hb_000110_330--Hb_007407_010 Hb_000110_330--Hb_005357_270 Hb_000133_060 Hb_000133_060 Hb_000110_330--Hb_000133_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.802108 0.382314 0.0693824 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.229485 0

CAGE analysis