Hb_004785_140

Information

Type -
Description -
Location Contig4785: 188408-195471
Sequence    

Annotation

kegg
ID rcu:RCOM_0136880
description Ran GTPase binding protein, putative
nr
ID XP_012066052.1
description PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
swissprot
ID Q15751
description Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2
trembl
ID A0A067LFW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25205 PE=4 SV=1
Gene Ontology
ID GO:0016874
description e3 ubiquitin-protein ligase herc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44569: 188528-195472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_140 0.0 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
2 Hb_002205_190 0.0820041332 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
3 Hb_005542_060 0.1014740794 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_011030_020 0.1022956336 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
5 Hb_001493_180 0.1082057592 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
6 Hb_000236_140 0.1160429116 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
7 Hb_000445_040 0.1170280199 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
8 Hb_001811_030 0.1183645774 - - Beta-ureidopropionase, putative [Ricinus communis]
9 Hb_012325_020 0.1186773892 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
10 Hb_000011_330 0.1216352113 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
11 Hb_003976_030 0.1222874997 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
12 Hb_000567_380 0.1237072029 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
13 Hb_000327_220 0.1242300894 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
14 Hb_008695_140 0.125889877 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
15 Hb_000092_010 0.1289151613 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
16 Hb_004079_030 0.1294344406 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
17 Hb_002496_040 0.1310681146 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
18 Hb_005162_070 0.1319880437 - - conserved hypothetical protein [Ricinus communis]
19 Hb_056753_010 0.1323955491 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_000116_010 0.1335368314 - - isocitrate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004785_140 Hb_004785_140 Hb_002205_190 Hb_002205_190 Hb_004785_140--Hb_002205_190 Hb_005542_060 Hb_005542_060 Hb_004785_140--Hb_005542_060 Hb_011030_020 Hb_011030_020 Hb_004785_140--Hb_011030_020 Hb_001493_180 Hb_001493_180 Hb_004785_140--Hb_001493_180 Hb_000236_140 Hb_000236_140 Hb_004785_140--Hb_000236_140 Hb_000445_040 Hb_000445_040 Hb_004785_140--Hb_000445_040 Hb_000011_330 Hb_000011_330 Hb_002205_190--Hb_000011_330 Hb_000567_380 Hb_000567_380 Hb_002205_190--Hb_000567_380 Hb_003976_030 Hb_003976_030 Hb_002205_190--Hb_003976_030 Hb_008695_140 Hb_008695_140 Hb_002205_190--Hb_008695_140 Hb_002496_040 Hb_002496_040 Hb_002205_190--Hb_002496_040 Hb_027393_030 Hb_027393_030 Hb_005542_060--Hb_027393_030 Hb_002205_130 Hb_002205_130 Hb_005542_060--Hb_002205_130 Hb_005542_060--Hb_011030_020 Hb_000239_020 Hb_000239_020 Hb_005542_060--Hb_000239_020 Hb_000748_130 Hb_000748_130 Hb_005542_060--Hb_000748_130 Hb_005162_070 Hb_005162_070 Hb_011030_020--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_010608_050 Hb_010608_050 Hb_011030_020--Hb_010608_050 Hb_011030_020--Hb_002205_130 Hb_008695_100 Hb_008695_100 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150 Hb_001090_050 Hb_001090_050 Hb_001493_180--Hb_001090_050 Hb_000260_570 Hb_000260_570 Hb_001493_180--Hb_000260_570 Hb_001493_180--Hb_005162_070 Hb_001817_020 Hb_001817_020 Hb_001493_180--Hb_001817_020 Hb_001493_180--Hb_001189_050 Hb_001493_180--Hb_011030_020 Hb_003687_100 Hb_003687_100 Hb_000236_140--Hb_003687_100 Hb_004128_180 Hb_004128_180 Hb_000236_140--Hb_004128_180 Hb_007416_270 Hb_007416_270 Hb_000236_140--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000236_140--Hb_000479_130 Hb_007075_050 Hb_007075_050 Hb_000236_140--Hb_007075_050 Hb_000172_560 Hb_000172_560 Hb_000236_140--Hb_000172_560 Hb_012325_020 Hb_012325_020 Hb_000445_040--Hb_012325_020 Hb_001507_040 Hb_001507_040 Hb_000445_040--Hb_001507_040 Hb_000165_160 Hb_000165_160 Hb_000445_040--Hb_000165_160 Hb_020805_130 Hb_020805_130 Hb_000445_040--Hb_020805_130 Hb_001318_270 Hb_001318_270 Hb_000445_040--Hb_001318_270 Hb_002830_030 Hb_002830_030 Hb_000445_040--Hb_002830_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.96769 10.4216 5.59888 7.45987 9.54544 9.31361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4187 11.6326 45.2559 9.32928 8.88096

CAGE analysis