Hb_004785_190

Information

Type -
Description -
Location Contig4785: 254918-259802
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21170g
description POPTRDRAFT_761021; PHD finger family protein
nr
ID XP_002307485.1
description PHD finger family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H7P9
description PHD finger family protein OS=Populus trichocarpa GN=POPTR_0005s21170g PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44577: 254899-259785 , PASA_asmbl_44578: 256273-256412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_190 0.0 - - PHD finger family protein [Populus trichocarpa]
2 Hb_000926_310 0.0761074292 - - uncharacterized protein LOC100500241 [Glycine max]
3 Hb_000610_010 0.0776230531 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
4 Hb_000661_140 0.0789610916 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
5 Hb_003687_230 0.0822144511 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
6 Hb_000009_530 0.082374631 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
7 Hb_002296_050 0.085839291 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
8 Hb_002639_150 0.0900287702 - - -
9 Hb_021576_100 0.0927143126 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
10 Hb_000926_180 0.0930304325 - - proline synthetase associated protein, putative [Ricinus communis]
11 Hb_002192_080 0.0943227114 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
12 Hb_000107_190 0.0988146955 - - 50S ribosomal protein L20 [Hevea brasiliensis]
13 Hb_001898_240 0.0990136454 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
14 Hb_153553_030 0.0991997834 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
15 Hb_000260_100 0.0993211272 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007313_090 0.0996006699 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000649_070 0.0996330519 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
18 Hb_001329_130 0.100184869 - - conserved hypothetical protein [Ricinus communis]
19 Hb_058972_010 0.1007975783 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
20 Hb_000576_050 0.1011402637 - - Kinase superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_004785_190 Hb_004785_190 Hb_000926_310 Hb_000926_310 Hb_004785_190--Hb_000926_310 Hb_000610_010 Hb_000610_010 Hb_004785_190--Hb_000610_010 Hb_000661_140 Hb_000661_140 Hb_004785_190--Hb_000661_140 Hb_003687_230 Hb_003687_230 Hb_004785_190--Hb_003687_230 Hb_000009_530 Hb_000009_530 Hb_004785_190--Hb_000009_530 Hb_002296_050 Hb_002296_050 Hb_004785_190--Hb_002296_050 Hb_002639_150 Hb_002639_150 Hb_000926_310--Hb_002639_150 Hb_000926_310--Hb_000661_140 Hb_020367_050 Hb_020367_050 Hb_000926_310--Hb_020367_050 Hb_000926_310--Hb_003687_230 Hb_005288_150 Hb_005288_150 Hb_000926_310--Hb_005288_150 Hb_000368_020 Hb_000368_020 Hb_000926_310--Hb_000368_020 Hb_000610_010--Hb_000009_530 Hb_004093_090 Hb_004093_090 Hb_000610_010--Hb_004093_090 Hb_000610_010--Hb_003687_230 Hb_000107_190 Hb_000107_190 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_003292_040 Hb_003292_040 Hb_000610_010--Hb_003292_040 Hb_000661_140--Hb_002639_150 Hb_011013_010 Hb_011013_010 Hb_000661_140--Hb_011013_010 Hb_000661_140--Hb_005288_150 Hb_000661_140--Hb_020367_050 Hb_003687_230--Hb_003292_040 Hb_003687_230--Hb_000009_530 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_000009_530--Hb_003292_040 Hb_002296_050--Hb_000107_190 Hb_000220_040 Hb_000220_040 Hb_002296_050--Hb_000220_040 Hb_002296_050--Hb_000610_010 Hb_010068_040 Hb_010068_040 Hb_002296_050--Hb_010068_040 Hb_021576_040 Hb_021576_040 Hb_002296_050--Hb_021576_040 Hb_002296_050--Hb_000009_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.8331 39.5839 59.2868 21.9685 43.2724 53.2268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.3584 55.0893 24.9764 14.5291 22.4725

CAGE analysis