Hb_004785_200

Information

Type -
Description -
Location Contig4785: 267482-268180
Sequence    

Annotation

kegg
ID rcu:RCOM_0137280
description Protein MKS1, putative
nr
ID XP_012066057.1
description PREDICTED: protein MKS1 [Jatropha curcas]
swissprot
ID Q8LGD5
description Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2
trembl
ID A0A067L700
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25214 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44579: 267552-267895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_200 0.0 - - PREDICTED: protein MKS1 [Jatropha curcas]
2 Hb_031862_200 0.0890118776 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
3 Hb_003680_010 0.1019293596 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_007035_010 0.1038411198 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
5 Hb_010880_010 0.1098710187 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
6 Hb_003077_140 0.1113325594 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
7 Hb_026144_030 0.1200035327 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
8 Hb_001866_100 0.1220605352 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
9 Hb_000009_390 0.1233788752 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
10 Hb_016637_020 0.1280610353 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
11 Hb_123560_050 0.1280967382 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
12 Hb_002818_070 0.1298022511 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_000767_010 0.133329646 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
14 Hb_001836_010 0.1334848449 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
15 Hb_000191_100 0.1353109435 - - cytochrome P450, putative [Ricinus communis]
16 Hb_005496_170 0.1362709402 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
17 Hb_001109_130 0.1370160087 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
18 Hb_001357_360 0.1399720657 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001819_010 0.1409472339 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
20 Hb_007205_020 0.1426475556 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]

Gene co-expression network

sample Hb_004785_200 Hb_004785_200 Hb_031862_200 Hb_031862_200 Hb_004785_200--Hb_031862_200 Hb_003680_010 Hb_003680_010 Hb_004785_200--Hb_003680_010 Hb_007035_010 Hb_007035_010 Hb_004785_200--Hb_007035_010 Hb_010880_010 Hb_010880_010 Hb_004785_200--Hb_010880_010 Hb_003077_140 Hb_003077_140 Hb_004785_200--Hb_003077_140 Hb_026144_030 Hb_026144_030 Hb_004785_200--Hb_026144_030 Hb_000191_100 Hb_000191_100 Hb_031862_200--Hb_000191_100 Hb_016637_020 Hb_016637_020 Hb_031862_200--Hb_016637_020 Hb_001866_100 Hb_001866_100 Hb_031862_200--Hb_001866_100 Hb_031862_200--Hb_007035_010 Hb_031862_200--Hb_003680_010 Hb_003680_010--Hb_007035_010 Hb_002615_080 Hb_002615_080 Hb_003680_010--Hb_002615_080 Hb_006827_030 Hb_006827_030 Hb_003680_010--Hb_006827_030 Hb_001883_010 Hb_001883_010 Hb_003680_010--Hb_001883_010 Hb_007035_010--Hb_001866_100 Hb_007035_010--Hb_006827_030 Hb_006588_020 Hb_006588_020 Hb_007035_010--Hb_006588_020 Hb_001836_010 Hb_001836_010 Hb_007035_010--Hb_001836_010 Hb_000009_390 Hb_000009_390 Hb_007035_010--Hb_000009_390 Hb_005496_170 Hb_005496_170 Hb_010880_010--Hb_005496_170 Hb_001109_130 Hb_001109_130 Hb_010880_010--Hb_001109_130 Hb_004122_060 Hb_004122_060 Hb_010880_010--Hb_004122_060 Hb_010880_010--Hb_026144_030 Hb_017098_050 Hb_017098_050 Hb_010880_010--Hb_017098_050 Hb_001153_090 Hb_001153_090 Hb_010880_010--Hb_001153_090 Hb_000767_010 Hb_000767_010 Hb_003077_140--Hb_000767_010 Hb_003077_140--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_003077_140--Hb_033153_040 Hb_123560_050 Hb_123560_050 Hb_003077_140--Hb_123560_050 Hb_001357_360 Hb_001357_360 Hb_003077_140--Hb_001357_360 Hb_002818_070 Hb_002818_070 Hb_003077_140--Hb_002818_070 Hb_008111_010 Hb_008111_010 Hb_026144_030--Hb_008111_010 Hb_000614_190 Hb_000614_190 Hb_026144_030--Hb_000614_190 Hb_026144_030--Hb_000767_010 Hb_001143_140 Hb_001143_140 Hb_026144_030--Hb_001143_140 Hb_026144_030--Hb_123560_050 Hb_007420_020 Hb_007420_020 Hb_026144_030--Hb_007420_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0351025 0.604267 0.379837 0.392707 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.57049 1.00816

CAGE analysis