Hb_004787_050

Information

Type -
Description -
Location Contig4787: 58582-62571
Sequence    

Annotation

kegg
ID rcu:RCOM_1514740
description hypothetical protein
nr
ID XP_012080237.1
description PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
swissprot
ID Q9STU3
description RINT1-like protein MAG2 OS=Arabidopsis thaliana GN=MAG2 PE=1 SV=1
trembl
ID A0A067KG71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11606 PE=4 SV=1
Gene Ontology
ID GO:0005783
description rint1-like protein mag2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44585: 60280-62834 , PASA_asmbl_44586: 58562-62834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004787_050 0.0 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
2 Hb_003058_260 0.063628298 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
3 Hb_001998_240 0.0654696054 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
4 Hb_002675_130 0.0684827863 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
5 Hb_007894_110 0.0750199686 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
6 Hb_003943_110 0.0752395645 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
7 Hb_001635_120 0.0759133821 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
8 Hb_001716_040 0.0774019587 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
9 Hb_012632_010 0.0783512026 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
10 Hb_000258_160 0.0787138895 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004030_080 0.0801559475 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
12 Hb_010863_010 0.080689739 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_027472_070 0.0808203062 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
14 Hb_001157_240 0.0816890326 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
15 Hb_002234_090 0.0818600531 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
16 Hb_002830_010 0.0829041333 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
17 Hb_002071_070 0.0841611264 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
18 Hb_004916_010 0.0847755446 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
19 Hb_003544_060 0.0848083759 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
20 Hb_000317_370 0.0848398083 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]

Gene co-expression network

sample Hb_004787_050 Hb_004787_050 Hb_003058_260 Hb_003058_260 Hb_004787_050--Hb_003058_260 Hb_001998_240 Hb_001998_240 Hb_004787_050--Hb_001998_240 Hb_002675_130 Hb_002675_130 Hb_004787_050--Hb_002675_130 Hb_007894_110 Hb_007894_110 Hb_004787_050--Hb_007894_110 Hb_003943_110 Hb_003943_110 Hb_004787_050--Hb_003943_110 Hb_001635_120 Hb_001635_120 Hb_004787_050--Hb_001635_120 Hb_012632_010 Hb_012632_010 Hb_003058_260--Hb_012632_010 Hb_002071_070 Hb_002071_070 Hb_003058_260--Hb_002071_070 Hb_000856_040 Hb_000856_040 Hb_003058_260--Hb_000856_040 Hb_000313_120 Hb_000313_120 Hb_003058_260--Hb_000313_120 Hb_003058_260--Hb_001998_240 Hb_002053_150 Hb_002053_150 Hb_001998_240--Hb_002053_150 Hb_006816_280 Hb_006816_280 Hb_001998_240--Hb_006816_280 Hb_001998_240--Hb_003943_110 Hb_001998_240--Hb_002675_130 Hb_002234_090 Hb_002234_090 Hb_002675_130--Hb_002234_090 Hb_022256_020 Hb_022256_020 Hb_002675_130--Hb_022256_020 Hb_004916_010 Hb_004916_010 Hb_002675_130--Hb_004916_010 Hb_011618_070 Hb_011618_070 Hb_002675_130--Hb_011618_070 Hb_007416_330 Hb_007416_330 Hb_007894_110--Hb_007416_330 Hb_001408_140 Hb_001408_140 Hb_007894_110--Hb_001408_140 Hb_024621_040 Hb_024621_040 Hb_007894_110--Hb_024621_040 Hb_000025_730 Hb_000025_730 Hb_007894_110--Hb_000025_730 Hb_003428_010 Hb_003428_010 Hb_007894_110--Hb_003428_010 Hb_007894_110--Hb_003058_260 Hb_001157_240 Hb_001157_240 Hb_003943_110--Hb_001157_240 Hb_001716_040 Hb_001716_040 Hb_003943_110--Hb_001716_040 Hb_005582_040 Hb_005582_040 Hb_003943_110--Hb_005582_040 Hb_027073_020 Hb_027073_020 Hb_003943_110--Hb_027073_020 Hb_008033_040 Hb_008033_040 Hb_003943_110--Hb_008033_040 Hb_000028_130 Hb_000028_130 Hb_001635_120--Hb_000028_130 Hb_000017_220 Hb_000017_220 Hb_001635_120--Hb_000017_220 Hb_001635_120--Hb_005582_040 Hb_000174_270 Hb_000174_270 Hb_001635_120--Hb_000174_270 Hb_001999_290 Hb_001999_290 Hb_001635_120--Hb_001999_290 Hb_001473_110 Hb_001473_110 Hb_001635_120--Hb_001473_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.66831 10.4628 7.9409 9.26904 6.20526 5.58862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.35744 7.73324 12.1455 10.6558 9.99279

CAGE analysis