Hb_004787_060

Information

Type -
Description -
Location Contig4787: 67664-70178
Sequence    

Annotation

kegg
ID rcu:RCOM_1514770
description 40S ribosomal protein S9, putative
nr
ID XP_012080241.1
description PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
swissprot
ID Q9FLF0
description 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1
trembl
ID A0A067K8C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11609 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s9-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44587: 67653-70285
cDNA
(Sanger)
(ID:Location)		 005_L08.ab1: 67830-70232 , 013_B22.ab1: 67881-70236 , 024_I02.ab1: 68004-70285 , 028_L08.ab1: 69042-70236 , 031_H16.ab1: 67897-70232 , 037_O07.ab1: 67773-70236 , 045_L02.ab1: 67854-70236

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004787_060 0.0 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
2 Hb_005322_040 0.059088888 - - 60S ribosomal protein L9, putative [Ricinus communis]
3 Hb_001329_290 0.0624758106 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
4 Hb_000286_070 0.0648759645 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
5 Hb_021419_020 0.0677127116 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
6 Hb_004449_170 0.0740106309 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
7 Hb_010921_010 0.0743790921 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
8 Hb_001504_020 0.0791020873 - - 40S ribosomal protein S12A [Hevea brasiliensis]
9 Hb_001459_080 0.080648481 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_002374_170 0.0811808833 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
11 Hb_175215_010 0.0832033293 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
12 Hb_001564_130 0.0888399947 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_001534_120 0.0892489142 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
14 Hb_007154_020 0.0894889401 - - -
15 Hb_001512_060 0.091689857 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
16 Hb_002066_070 0.0921052011 - - PREDICTED: uncharacterized protein LOC105631043 [Jatropha curcas]
17 Hb_002811_260 0.0921210811 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
18 Hb_168878_010 0.09426213 - - 60S ribosomal protein L32A [Hevea brasiliensis]
19 Hb_000260_550 0.0943022367 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
20 Hb_000009_530 0.0965400831 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]

Gene co-expression network

sample Hb_004787_060 Hb_004787_060 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_001329_290 Hb_001329_290 Hb_004787_060--Hb_001329_290 Hb_000286_070 Hb_000286_070 Hb_004787_060--Hb_000286_070 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_004449_170 Hb_004449_170 Hb_004787_060--Hb_004449_170 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010 Hb_000012_220 Hb_000012_220 Hb_005322_040--Hb_000012_220 Hb_005322_040--Hb_010921_010 Hb_013405_090 Hb_013405_090 Hb_005322_040--Hb_013405_090 Hb_011609_100 Hb_011609_100 Hb_005322_040--Hb_011609_100 Hb_001512_060 Hb_001512_060 Hb_005322_040--Hb_001512_060 Hb_001329_290--Hb_004449_170 Hb_001329_290--Hb_000286_070 Hb_001564_130 Hb_001564_130 Hb_001329_290--Hb_001564_130 Hb_003292_040 Hb_003292_040 Hb_001329_290--Hb_003292_040 Hb_000265_240 Hb_000265_240 Hb_001329_290--Hb_000265_240 Hb_000009_530 Hb_000009_530 Hb_000286_070--Hb_000009_530 Hb_001534_120 Hb_001534_120 Hb_000286_070--Hb_001534_120 Hb_000286_070--Hb_003292_040 Hb_003935_020 Hb_003935_020 Hb_000286_070--Hb_003935_020 Hb_002811_260 Hb_002811_260 Hb_021419_020--Hb_002811_260 Hb_001504_020 Hb_001504_020 Hb_021419_020--Hb_001504_020 Hb_002112_020 Hb_002112_020 Hb_021419_020--Hb_002112_020 Hb_021419_020--Hb_000286_070 Hb_021419_020--Hb_003292_040 Hb_002477_300 Hb_002477_300 Hb_004449_170--Hb_002477_300 Hb_005588_030 Hb_005588_030 Hb_004449_170--Hb_005588_030 Hb_004449_170--Hb_001512_060 Hb_004449_170--Hb_000286_070 Hb_010921_010--Hb_001512_060 Hb_010921_010--Hb_001534_120 Hb_005993_040 Hb_005993_040 Hb_010921_010--Hb_005993_040 Hb_007154_020 Hb_007154_020 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.519 55.1945 140.201 47.2199 127.89 112.941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
118.253 253.14 72.3476 69.9868 40.1744

CAGE analysis