Hb_004787_090

Information

Type -
Description -
Location Contig4787: 81961-84258
Sequence    

Annotation

kegg
ID rcu:RCOM_1514800
description Protein HVA22, putative
nr
ID XP_012080245.1
description PREDICTED: HVA22-like protein a [Jatropha curcas]
swissprot
ID Q9S7V4
description HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1
trembl
ID A0A067KG74
description HVA22-like protein OS=Jatropha curcas GN=JCGZ_11611 PE=3 SV=1
Gene Ontology
ID GO:0016021
description hva22-like protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44592: 82103-84100
cDNA
(Sanger)
(ID:Location)		 037_P23.ab1: 82130-84100

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004787_090 0.0 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
2 Hb_048141_010 0.1063963407 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
3 Hb_004659_120 0.1298748834 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
4 Hb_006501_110 0.1299340773 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
5 Hb_008847_010 0.1368029783 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_023226_090 0.1422656546 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
7 Hb_005271_170 0.14555907 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
8 Hb_002447_030 0.146425304 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
9 Hb_000184_040 0.1474814352 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
10 Hb_001623_240 0.1479030394 - - hypothetical protein VITISV_004933 [Vitis vinifera]
11 Hb_000206_220 0.1525967878 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
12 Hb_000699_110 0.1535411393 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
13 Hb_003540_230 0.1549614185 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
14 Hb_003038_180 0.1550626183 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
15 Hb_001999_120 0.1553788983 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
16 Hb_001631_080 0.1588259335 - - PREDICTED: importin-5-like [Populus euphratica]
17 Hb_002518_250 0.1591302212 - - conserved hypothetical protein 10 [Hevea brasiliensis]
18 Hb_001373_150 0.1610882128 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
19 Hb_011931_050 0.1613935261 - - fk506-binding protein, putative [Ricinus communis]
20 Hb_092100_020 0.1624646962 - - strictosidine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004787_090 Hb_004787_090 Hb_048141_010 Hb_048141_010 Hb_004787_090--Hb_048141_010 Hb_004659_120 Hb_004659_120 Hb_004787_090--Hb_004659_120 Hb_006501_110 Hb_006501_110 Hb_004787_090--Hb_006501_110 Hb_008847_010 Hb_008847_010 Hb_004787_090--Hb_008847_010 Hb_023226_090 Hb_023226_090 Hb_004787_090--Hb_023226_090 Hb_005271_170 Hb_005271_170 Hb_004787_090--Hb_005271_170 Hb_048141_010--Hb_008847_010 Hb_003540_230 Hb_003540_230 Hb_048141_010--Hb_003540_230 Hb_010578_090 Hb_010578_090 Hb_048141_010--Hb_010578_090 Hb_005016_130 Hb_005016_130 Hb_048141_010--Hb_005016_130 Hb_001631_080 Hb_001631_080 Hb_048141_010--Hb_001631_080 Hb_001205_090 Hb_001205_090 Hb_004659_120--Hb_001205_090 Hb_000184_040 Hb_000184_040 Hb_004659_120--Hb_000184_040 Hb_004659_120--Hb_023226_090 Hb_006831_010 Hb_006831_010 Hb_004659_120--Hb_006831_010 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_010174_120 Hb_010174_120 Hb_004659_120--Hb_010174_120 Hb_000481_020 Hb_000481_020 Hb_006501_110--Hb_000481_020 Hb_000982_070 Hb_000982_070 Hb_006501_110--Hb_000982_070 Hb_000390_200 Hb_000390_200 Hb_006501_110--Hb_000390_200 Hb_006501_110--Hb_004659_120 Hb_000723_090 Hb_000723_090 Hb_006501_110--Hb_000723_090 Hb_008847_010--Hb_005016_130 Hb_008408_030 Hb_008408_030 Hb_008847_010--Hb_008408_030 Hb_008847_010--Hb_010578_090 Hb_000787_070 Hb_000787_070 Hb_008847_010--Hb_000787_070 Hb_008847_010--Hb_003540_230 Hb_092100_020 Hb_092100_020 Hb_023226_090--Hb_092100_020 Hb_002352_010 Hb_002352_010 Hb_023226_090--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_023226_090--Hb_001473_130 Hb_002025_320 Hb_002025_320 Hb_023226_090--Hb_002025_320 Hb_001369_050 Hb_001369_050 Hb_023226_090--Hb_001369_050 Hb_157022_020 Hb_157022_020 Hb_023226_090--Hb_157022_020 Hb_001047_010 Hb_001047_010 Hb_005271_170--Hb_001047_010 Hb_005271_170--Hb_000184_040 Hb_023988_020 Hb_023988_020 Hb_005271_170--Hb_023988_020 Hb_003453_010 Hb_003453_010 Hb_005271_170--Hb_003453_010 Hb_002400_220 Hb_002400_220 Hb_005271_170--Hb_002400_220 Hb_001269_150 Hb_001269_150 Hb_005271_170--Hb_001269_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0032 0.624544 4.6136 10.2209 21.7108 26.4215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.3573 24.7648 20.8793 6.09845 1.34206

CAGE analysis