Hb_004787_110

Information

Type -
Description -
Location Contig4787: 106581-110948
Sequence    

Annotation

kegg
ID rcu:RCOM_1514820
description hypothetical protein
nr
ID XP_002511562.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R987
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1514820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44595: 107903-109071 , PASA_asmbl_44596: 108425-108551 , PASA_asmbl_44597: 109595-109800 , PASA_asmbl_44598: 109801-110019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004787_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002346_010 0.0829021197 - - -
3 Hb_007576_080 0.087639231 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
4 Hb_034552_030 0.1043291426 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
5 Hb_002320_040 0.1053758187 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
6 Hb_000331_060 0.1117377057 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
7 Hb_002585_040 0.1127464332 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
8 Hb_000457_100 0.1139984037 - - prohibitin, putative [Ricinus communis]
9 Hb_101733_030 0.1184109362 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
10 Hb_002192_010 0.1192819316 - - -
11 Hb_003780_030 0.1209994233 - - PREDICTED: protein CMSS1 [Jatropha curcas]
12 Hb_007423_040 0.1240715981 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
13 Hb_004837_240 0.1242427741 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
14 Hb_001214_060 0.1242835035 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
15 Hb_008103_070 0.1251467827 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
16 Hb_000796_210 0.1269296385 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000589_120 0.1274747944 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
18 Hb_000163_220 0.1276185577 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
19 Hb_027472_040 0.1276592155 - - SKP1 [Hevea brasiliensis]
20 Hb_005618_050 0.1280829199 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004787_110 Hb_004787_110 Hb_002346_010 Hb_002346_010 Hb_004787_110--Hb_002346_010 Hb_007576_080 Hb_007576_080 Hb_004787_110--Hb_007576_080 Hb_034552_030 Hb_034552_030 Hb_004787_110--Hb_034552_030 Hb_002320_040 Hb_002320_040 Hb_004787_110--Hb_002320_040 Hb_000331_060 Hb_000331_060 Hb_004787_110--Hb_000331_060 Hb_002585_040 Hb_002585_040 Hb_004787_110--Hb_002585_040 Hb_000457_100 Hb_000457_100 Hb_002346_010--Hb_000457_100 Hb_002346_010--Hb_007576_080 Hb_000676_260 Hb_000676_260 Hb_002346_010--Hb_000676_260 Hb_002346_010--Hb_002585_040 Hb_002346_010--Hb_002320_040 Hb_014109_040 Hb_014109_040 Hb_007576_080--Hb_014109_040 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_000589_120 Hb_000589_120 Hb_007576_080--Hb_000589_120 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_007576_080--Hb_002585_040 Hb_034552_030--Hb_002320_040 Hb_006588_200 Hb_006588_200 Hb_034552_030--Hb_006588_200 Hb_000020_150 Hb_000020_150 Hb_034552_030--Hb_000020_150 Hb_003464_080 Hb_003464_080 Hb_034552_030--Hb_003464_080 Hb_028872_090 Hb_028872_090 Hb_034552_030--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_034552_030--Hb_000120_430 Hb_024958_010 Hb_024958_010 Hb_002320_040--Hb_024958_010 Hb_000684_380 Hb_000684_380 Hb_002320_040--Hb_000684_380 Hb_002936_010 Hb_002936_010 Hb_002320_040--Hb_002936_010 Hb_004837_240 Hb_004837_240 Hb_002320_040--Hb_004837_240 Hb_000062_070 Hb_000062_070 Hb_002320_040--Hb_000062_070 Hb_004122_040 Hb_004122_040 Hb_000331_060--Hb_004122_040 Hb_073973_130 Hb_073973_130 Hb_000331_060--Hb_073973_130 Hb_002119_080 Hb_002119_080 Hb_000331_060--Hb_002119_080 Hb_000107_190 Hb_000107_190 Hb_000331_060--Hb_000107_190 Hb_058972_010 Hb_058972_010 Hb_000331_060--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000331_060--Hb_005337_090 Hb_000563_230 Hb_000563_230 Hb_002585_040--Hb_000563_230 Hb_000487_210 Hb_000487_210 Hb_002585_040--Hb_000487_210 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002296_050 Hb_002296_050 Hb_002585_040--Hb_002296_050 Hb_004032_430 Hb_004032_430 Hb_002585_040--Hb_004032_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.909052 0.848546 0.90071 0.906505 1.48677 0.807078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.947288 1.58748 0.361375 1.62265 0.335005

CAGE analysis