Hb_004800_070

Information

Type -
Description -
Location Contig4800: 58847-61614
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44684: 54829-60335
cDNA
(Sanger)
(ID:Location)		 032_P16.ab1: 59353-60335

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_070 0.0 - - -
2 Hb_172632_090 0.0808933627 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
3 Hb_003126_080 0.0921467481 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
4 Hb_154826_010 0.0939265779 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_000258_350 0.0958038397 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
6 Hb_004223_280 0.1038710866 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
7 Hb_003976_010 0.1056976843 - - methionine aminopeptidase, putative [Ricinus communis]
8 Hb_002685_170 0.1058154032 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
9 Hb_000251_130 0.1063009798 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
10 Hb_002471_150 0.1067015224 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
11 Hb_009265_090 0.1096243992 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
12 Hb_006816_200 0.1107023269 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002311_350 0.1123140124 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
14 Hb_001766_110 0.1141239447 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
15 Hb_022216_020 0.1141423664 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_006502_070 0.1142116298 - - separase, putative [Ricinus communis]
17 Hb_000009_460 0.1143075444 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005357_030 0.1144267421 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
19 Hb_003159_080 0.1150437234 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
20 Hb_000022_230 0.1151407397 - - hypothetical protein RCOM_0803470 [Ricinus communis]

Gene co-expression network

sample Hb_004800_070 Hb_004800_070 Hb_172632_090 Hb_172632_090 Hb_004800_070--Hb_172632_090 Hb_003126_080 Hb_003126_080 Hb_004800_070--Hb_003126_080 Hb_154826_010 Hb_154826_010 Hb_004800_070--Hb_154826_010 Hb_000258_350 Hb_000258_350 Hb_004800_070--Hb_000258_350 Hb_004223_280 Hb_004223_280 Hb_004800_070--Hb_004223_280 Hb_003976_010 Hb_003976_010 Hb_004800_070--Hb_003976_010 Hb_172632_090--Hb_003126_080 Hb_003615_010 Hb_003615_010 Hb_172632_090--Hb_003615_010 Hb_005993_040 Hb_005993_040 Hb_172632_090--Hb_005993_040 Hb_000251_130 Hb_000251_130 Hb_172632_090--Hb_000251_130 Hb_001226_160 Hb_001226_160 Hb_172632_090--Hb_001226_160 Hb_002311_350 Hb_002311_350 Hb_172632_090--Hb_002311_350 Hb_000656_400 Hb_000656_400 Hb_003126_080--Hb_000656_400 Hb_003126_080--Hb_005993_040 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_003126_080--Hb_004223_280 Hb_002471_150 Hb_002471_150 Hb_154826_010--Hb_002471_150 Hb_000227_230 Hb_000227_230 Hb_154826_010--Hb_000227_230 Hb_003683_040 Hb_003683_040 Hb_154826_010--Hb_003683_040 Hb_000009_460 Hb_000009_460 Hb_154826_010--Hb_000009_460 Hb_009793_010 Hb_009793_010 Hb_154826_010--Hb_009793_010 Hb_114893_030 Hb_114893_030 Hb_000258_350--Hb_114893_030 Hb_000698_030 Hb_000698_030 Hb_000258_350--Hb_000698_030 Hb_011609_100 Hb_011609_100 Hb_000258_350--Hb_011609_100 Hb_000258_350--Hb_172632_090 Hb_009265_090 Hb_009265_090 Hb_000258_350--Hb_009265_090 Hb_000258_350--Hb_003126_080 Hb_002137_020 Hb_002137_020 Hb_004223_280--Hb_002137_020 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_022216_020 Hb_022216_020 Hb_003976_010--Hb_022216_020 Hb_006400_030 Hb_006400_030 Hb_003976_010--Hb_006400_030 Hb_015001_020 Hb_015001_020 Hb_003976_010--Hb_015001_020 Hb_003976_010--Hb_172632_090 Hb_001604_010 Hb_001604_010 Hb_003976_010--Hb_001604_010 Hb_007426_230 Hb_007426_230 Hb_003976_010--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2661 1.01942 0.462473 0.572811 1.52476 1.23588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72945 2.52038 1.47244 1.85028 0.245474

CAGE analysis