Hb_004800_080

Information

Type -
Description -
Location Contig4800: 65004-68131
Sequence    

Annotation

kegg
ID pxb:103947495
description acidic leucine-rich nuclear phosphoprotein 32-related protein-like
nr
ID XP_012081405.1
description PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
swissprot
ID Q9SCQ7
description Acidic leucine-rich nuclear phosphoprotein 32-related protein OS=Arabidopsis thaliana GN=At3g50690 PE=2 SV=1
trembl
ID A0A067K1F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19112 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44686: 65052-66262 , PASA_asmbl_44687: 66287-68630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_080 0.0 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
2 Hb_008554_130 0.0471732796 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
3 Hb_167498_010 0.0611871391 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
4 Hb_120327_010 0.0665918823 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
5 Hb_002391_310 0.0670347947 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
6 Hb_007254_070 0.0676514025 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
7 Hb_001369_730 0.0701150781 - - F5O11.10, putative isoform 1 [Theobroma cacao]
8 Hb_000041_110 0.0732599814 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
9 Hb_009767_110 0.0747233415 - - -
10 Hb_000291_050 0.0755922737 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
11 Hb_011491_010 0.0762899612 - - Protein YME1, putative [Ricinus communis]
12 Hb_000329_710 0.0762909132 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
13 Hb_000329_470 0.0763342193 - - ccr4-not transcription complex, putative [Ricinus communis]
14 Hb_001838_060 0.0772954285 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
15 Hb_009382_010 0.0778617391 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_007416_180 0.0785070326 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
17 Hb_001329_160 0.078538959 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
18 Hb_000538_270 0.0803816048 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
19 Hb_001638_270 0.0807092533 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
20 Hb_005496_130 0.081167088 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004800_080 Hb_004800_080 Hb_008554_130 Hb_008554_130 Hb_004800_080--Hb_008554_130 Hb_167498_010 Hb_167498_010 Hb_004800_080--Hb_167498_010 Hb_120327_010 Hb_120327_010 Hb_004800_080--Hb_120327_010 Hb_002391_310 Hb_002391_310 Hb_004800_080--Hb_002391_310 Hb_007254_070 Hb_007254_070 Hb_004800_080--Hb_007254_070 Hb_001369_730 Hb_001369_730 Hb_004800_080--Hb_001369_730 Hb_009767_110 Hb_009767_110 Hb_008554_130--Hb_009767_110 Hb_005496_130 Hb_005496_130 Hb_008554_130--Hb_005496_130 Hb_044728_010 Hb_044728_010 Hb_008554_130--Hb_044728_010 Hb_008554_130--Hb_001369_730 Hb_008554_130--Hb_167498_010 Hb_167498_010--Hb_001369_730 Hb_003158_010 Hb_003158_010 Hb_167498_010--Hb_003158_010 Hb_001409_020 Hb_001409_020 Hb_167498_010--Hb_001409_020 Hb_000329_470 Hb_000329_470 Hb_167498_010--Hb_000329_470 Hb_000225_040 Hb_000225_040 Hb_167498_010--Hb_000225_040 Hb_167498_010--Hb_007254_070 Hb_000827_070 Hb_000827_070 Hb_120327_010--Hb_000827_070 Hb_120327_010--Hb_007254_070 Hb_120327_010--Hb_044728_010 Hb_120327_010--Hb_000225_040 Hb_000107_330 Hb_000107_330 Hb_120327_010--Hb_000107_330 Hb_000056_240 Hb_000056_240 Hb_002391_310--Hb_000056_240 Hb_000556_160 Hb_000556_160 Hb_002391_310--Hb_000556_160 Hb_000329_710 Hb_000329_710 Hb_002391_310--Hb_000329_710 Hb_000710_060 Hb_000710_060 Hb_002391_310--Hb_000710_060 Hb_000041_100 Hb_000041_100 Hb_002391_310--Hb_000041_100 Hb_004355_020 Hb_004355_020 Hb_007254_070--Hb_004355_020 Hb_002903_060 Hb_002903_060 Hb_007254_070--Hb_002903_060 Hb_000395_130 Hb_000395_130 Hb_007254_070--Hb_000395_130 Hb_007254_070--Hb_003158_010 Hb_001369_730--Hb_000329_470 Hb_001369_730--Hb_001409_020 Hb_001198_100 Hb_001198_100 Hb_001369_730--Hb_001198_100 Hb_000732_010 Hb_000732_010 Hb_001369_730--Hb_000732_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.0132 70.0978 23.7037 29.7056 58.8933 52.7001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.5201 69.1178 63.9677 52.0534 51.8252

CAGE analysis