Hb_004800_160

Information

Type -
Description -
Location Contig4800: 122750-126818
Sequence    

Annotation

kegg
ID tcc:TCM_000403
description hypothetical protein
nr
ID XP_007046961.1
description Uncharacterized protein TCM_000403 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DMC5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_000403 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44694: 120301-121782 , PASA_asmbl_44695: 123073-127670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_160 0.0 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
2 Hb_000861_040 0.0909034289 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
3 Hb_005357_150 0.0909822357 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000025_480 0.0950291763 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
5 Hb_010402_010 0.0982606036 - - BnaC06g23470D [Brassica napus]
6 Hb_000427_030 0.1042323585 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001981_090 0.1043129872 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
8 Hb_017124_010 0.1074387366 - - conserved hypothetical protein [Ricinus communis]
9 Hb_143629_090 0.108547332 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
10 Hb_001141_470 0.1112348305 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
11 Hb_011174_070 0.1125704105 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
12 Hb_026988_020 0.1132160964 - - outward rectifying K+ channel [Hevea brasiliensis]
13 Hb_003408_030 0.1163043048 - - PREDICTED: protein YIF1B [Jatropha curcas]
14 Hb_002357_040 0.1175968813 - - latex-abundant protein [Hevea brasiliensis]
15 Hb_000173_170 0.1193017348 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
16 Hb_001606_070 0.1193843655 - - fimbrin, putative [Ricinus communis]
17 Hb_000193_250 0.1213006905 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
18 Hb_004882_020 0.1216872812 - - -
19 Hb_183612_100 0.1232737555 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
20 Hb_152439_020 0.1237018525 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004800_160 Hb_004800_160 Hb_000861_040 Hb_000861_040 Hb_004800_160--Hb_000861_040 Hb_005357_150 Hb_005357_150 Hb_004800_160--Hb_005357_150 Hb_000025_480 Hb_000025_480 Hb_004800_160--Hb_000025_480 Hb_010402_010 Hb_010402_010 Hb_004800_160--Hb_010402_010 Hb_000427_030 Hb_000427_030 Hb_004800_160--Hb_000427_030 Hb_001981_090 Hb_001981_090 Hb_004800_160--Hb_001981_090 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_002326_030 Hb_002326_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_007229_060 Hb_007229_060 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100 Hb_005357_150--Hb_001981_090 Hb_004108_050 Hb_004108_050 Hb_005357_150--Hb_004108_050 Hb_003057_120 Hb_003057_120 Hb_005357_150--Hb_003057_120 Hb_003151_050 Hb_003151_050 Hb_005357_150--Hb_003151_050 Hb_005357_150--Hb_003408_030 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_010402_010--Hb_000538_210 Hb_010174_120 Hb_010174_120 Hb_010402_010--Hb_010174_120 Hb_000173_170 Hb_000173_170 Hb_010402_010--Hb_000173_170 Hb_002498_100 Hb_002498_100 Hb_010402_010--Hb_002498_100 Hb_010402_010--Hb_000025_480 Hb_000427_030--Hb_011174_070 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_001767_010 Hb_001767_010 Hb_000427_030--Hb_001767_010 Hb_000427_030--Hb_000025_480 Hb_000427_030--Hb_003057_120 Hb_001366_220 Hb_001366_220 Hb_001981_090--Hb_001366_220 Hb_000809_040 Hb_000809_040 Hb_001981_090--Hb_000809_040 Hb_001981_090--Hb_000983_100 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7807 2.61839 2.40696 4.40897 27.0374 18.8144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3305 22.2291 54.6795 7.3341 3.34557

CAGE analysis