Hb_004800_230

Information

Type -
Description -
Location Contig4800: 178631-180730
Sequence    

Annotation

kegg
ID rcu:RCOM_0536830
description Protein FAM96B, putative
nr
ID XP_012071643.1
description PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
swissprot
ID Q9C9G6
description MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2
trembl
ID B9S6H7
description Protein FAM96B, putative OS=Ricinus communis GN=RCOM_0536830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44711: 178928-180208 , PASA_asmbl_44712: 178890-180208 , PASA_asmbl_44713: 178659-180071 , PASA_asmbl_44714: 178890-180055
cDNA
(Sanger)
(ID:Location)		 047_B09.ab1: 178655-179326

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_230 0.0 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
2 Hb_000329_030 0.0703976463 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
3 Hb_024071_020 0.0724085095 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
4 Hb_000163_160 0.0725610394 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
5 Hb_003126_050 0.0746902827 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
6 Hb_000494_020 0.0753807561 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
7 Hb_001184_090 0.0760505596 - - PREDICTED: TIP41-like protein [Jatropha curcas]
8 Hb_002105_090 0.0782598966 - - Rab4 [Hevea brasiliensis]
9 Hb_003058_130 0.0823926108 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
10 Hb_002043_190 0.083036127 - - rwd domain-containing protein, putative [Ricinus communis]
11 Hb_003878_010 0.0838420409 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
12 Hb_128048_010 0.0839746608 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
13 Hb_002233_150 0.0846496888 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
14 Hb_000926_250 0.0846732643 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
15 Hb_000103_560 0.0853747592 - - ADP-ribosylation factor, putative [Ricinus communis]
16 Hb_000640_240 0.0859263547 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
17 Hb_046049_010 0.0870775255 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
18 Hb_000610_050 0.0875295918 - - skp1, putative [Ricinus communis]
19 Hb_007477_070 0.0877276231 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
20 Hb_001454_400 0.0880245246 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_004800_230 Hb_004800_230 Hb_000329_030 Hb_000329_030 Hb_004800_230--Hb_000329_030 Hb_024071_020 Hb_024071_020 Hb_004800_230--Hb_024071_020 Hb_000163_160 Hb_000163_160 Hb_004800_230--Hb_000163_160 Hb_003126_050 Hb_003126_050 Hb_004800_230--Hb_003126_050 Hb_000494_020 Hb_000494_020 Hb_004800_230--Hb_000494_020 Hb_001184_090 Hb_001184_090 Hb_004800_230--Hb_001184_090 Hb_009557_070 Hb_009557_070 Hb_000329_030--Hb_009557_070 Hb_002774_060 Hb_002774_060 Hb_000329_030--Hb_002774_060 Hb_000656_040 Hb_000656_040 Hb_000329_030--Hb_000656_040 Hb_000045_090 Hb_000045_090 Hb_000329_030--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_000329_030--Hb_143398_010 Hb_000579_140 Hb_000579_140 Hb_000329_030--Hb_000579_140 Hb_001140_370 Hb_001140_370 Hb_024071_020--Hb_001140_370 Hb_000610_050 Hb_000610_050 Hb_024071_020--Hb_000610_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_010407_040 Hb_010407_040 Hb_000163_160--Hb_010407_040 Hb_001369_660 Hb_001369_660 Hb_000163_160--Hb_001369_660 Hb_000163_160--Hb_000494_020 Hb_002105_090 Hb_002105_090 Hb_000163_160--Hb_002105_090 Hb_000000_160 Hb_000000_160 Hb_000163_160--Hb_000000_160 Hb_003417_020 Hb_003417_020 Hb_003126_050--Hb_003417_020 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_007691_030 Hb_007691_030 Hb_003126_050--Hb_007691_030 Hb_000494_020--Hb_010407_040 Hb_000494_020--Hb_002105_090 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_001184_090--Hb_002105_090 Hb_001184_090--Hb_000494_020 Hb_000000_170 Hb_000000_170 Hb_001184_090--Hb_000000_170 Hb_000832_140 Hb_000832_140 Hb_001184_090--Hb_000832_140 Hb_000454_050 Hb_000454_050 Hb_001184_090--Hb_000454_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.721 14.3156 23.6129 24.5538 31.8075 38.3441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.0798 50.8075 27.0253 25.5665 5.76555

CAGE analysis