Hb_004804_010

Information

Type -
Description -
Location Contig4804: 11489-13085
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12290g
description POPTRDRAFT_780716; hypothetical protein
nr
ID XP_011002666.1
description PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
swissprot
ID B6VJS4
description Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2
trembl
ID B9IQS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12290g PE=4 SV=2
Gene Ontology
ID GO:0008171
description trans-resveratrol di-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004804_010 0.0 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
2 Hb_027506_030 0.0537753146 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
3 Hb_138585_010 0.0592984406 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
4 Hb_085962_010 0.0777928064 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
5 Hb_012395_060 0.0801021596 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
6 Hb_010264_020 0.0832041183 - - unnamed protein product [Vitis vinifera]
7 Hb_169077_030 0.0838614292 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
8 Hb_000417_210 0.0923826999 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000303_060 0.0943204238 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_000017_140 0.0962094173 - - polygalacturonase, putative [Ricinus communis]
11 Hb_001396_030 0.101643486 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
12 Hb_001534_140 0.1038123084 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
13 Hb_006846_040 0.1101318323 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
14 Hb_000152_880 0.1101503183 - - -
15 Hb_000903_040 0.1130406069 - - PREDICTED: pirin-like protein [Jatropha curcas]
16 Hb_001541_130 0.1145963162 - - GDSL esterase/lipase [Morus notabilis]
17 Hb_006788_110 0.1151269219 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
18 Hb_006242_050 0.1168643051 - - Osmotin precursor, putative [Ricinus communis]
19 Hb_001269_660 0.1176416252 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
20 Hb_032572_010 0.1198838624 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]

Gene co-expression network

sample Hb_004804_010 Hb_004804_010 Hb_027506_030 Hb_027506_030 Hb_004804_010--Hb_027506_030 Hb_138585_010 Hb_138585_010 Hb_004804_010--Hb_138585_010 Hb_085962_010 Hb_085962_010 Hb_004804_010--Hb_085962_010 Hb_012395_060 Hb_012395_060 Hb_004804_010--Hb_012395_060 Hb_010264_020 Hb_010264_020 Hb_004804_010--Hb_010264_020 Hb_169077_030 Hb_169077_030 Hb_004804_010--Hb_169077_030 Hb_027506_030--Hb_085962_010 Hb_001396_030 Hb_001396_030 Hb_027506_030--Hb_001396_030 Hb_027506_030--Hb_010264_020 Hb_000303_060 Hb_000303_060 Hb_027506_030--Hb_000303_060 Hb_032572_010 Hb_032572_010 Hb_027506_030--Hb_032572_010 Hb_006846_040 Hb_006846_040 Hb_138585_010--Hb_006846_040 Hb_001534_140 Hb_001534_140 Hb_138585_010--Hb_001534_140 Hb_000417_210 Hb_000417_210 Hb_138585_010--Hb_000417_210 Hb_009252_070 Hb_009252_070 Hb_138585_010--Hb_009252_070 Hb_000903_040 Hb_000903_040 Hb_138585_010--Hb_000903_040 Hb_085962_010--Hb_001396_030 Hb_085962_010--Hb_000303_060 Hb_085962_010--Hb_010264_020 Hb_002272_120 Hb_002272_120 Hb_085962_010--Hb_002272_120 Hb_012395_060--Hb_169077_030 Hb_001269_660 Hb_001269_660 Hb_012395_060--Hb_001269_660 Hb_012395_060--Hb_001534_140 Hb_012395_060--Hb_138585_010 Hb_000152_570 Hb_000152_570 Hb_012395_060--Hb_000152_570 Hb_010264_020--Hb_000303_060 Hb_010264_020--Hb_032572_010 Hb_010264_020--Hb_001396_030 Hb_007370_010 Hb_007370_010 Hb_169077_030--Hb_007370_010 Hb_169077_030--Hb_000152_570 Hb_006154_010 Hb_006154_010 Hb_169077_030--Hb_006154_010 Hb_000193_070 Hb_000193_070 Hb_169077_030--Hb_000193_070 Hb_005332_160 Hb_005332_160 Hb_169077_030--Hb_005332_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.124176 1.08749 2.68129 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.427813 1.58927

CAGE analysis