Hb_004807_010

Information

Type -
Description -
Location Contig4807: 13228-13542
Sequence    

Annotation

kegg
ID tcc:TCM_006757
description SAUR family protein
nr
ID XP_012084419.1
description PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
swissprot
ID Q9SGU2
description Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana GN=SAUR71 PE=2 SV=1
trembl
ID A0A067JXT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19628 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44719: 12853-13565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004807_010 0.0 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
2 Hb_012098_120 0.0442665376 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
3 Hb_000329_120 0.0566881439 - - 21 kDa protein precursor, putative [Ricinus communis]
4 Hb_005839_040 0.0584015631 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
5 Hb_185811_010 0.0624751568 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
6 Hb_000803_080 0.0628365595 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_009233_020 0.0629778808 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
8 Hb_001345_050 0.0646002679 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
9 Hb_072771_010 0.0651484606 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
10 Hb_085682_010 0.0668358428 - - -
11 Hb_009225_060 0.0678770879 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
12 Hb_003913_120 0.0713358985 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
13 Hb_154038_010 0.0720064582 - - cytochrome P450, putative [Ricinus communis]
14 Hb_006483_040 0.0744090755 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
15 Hb_004837_010 0.0764933998 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
16 Hb_001472_150 0.0783106686 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
17 Hb_000077_020 0.0795033532 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001232_070 0.0800516384 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001981_050 0.0806980991 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
20 Hb_003734_070 0.0823037149 - - chlorophyll A/B binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004807_010 Hb_004807_010 Hb_012098_120 Hb_012098_120 Hb_004807_010--Hb_012098_120 Hb_000329_120 Hb_000329_120 Hb_004807_010--Hb_000329_120 Hb_005839_040 Hb_005839_040 Hb_004807_010--Hb_005839_040 Hb_185811_010 Hb_185811_010 Hb_004807_010--Hb_185811_010 Hb_000803_080 Hb_000803_080 Hb_004807_010--Hb_000803_080 Hb_009233_020 Hb_009233_020 Hb_004807_010--Hb_009233_020 Hb_012098_120--Hb_005839_040 Hb_012098_120--Hb_185811_010 Hb_012098_120--Hb_000803_080 Hb_001345_050 Hb_001345_050 Hb_012098_120--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_012098_120--Hb_072771_010 Hb_001232_070 Hb_001232_070 Hb_000329_120--Hb_001232_070 Hb_085682_010 Hb_085682_010 Hb_000329_120--Hb_085682_010 Hb_002391_340 Hb_002391_340 Hb_000329_120--Hb_002391_340 Hb_006483_040 Hb_006483_040 Hb_000329_120--Hb_006483_040 Hb_000329_120--Hb_005839_040 Hb_154038_010 Hb_154038_010 Hb_005839_040--Hb_154038_010 Hb_005839_040--Hb_006483_040 Hb_008453_050 Hb_008453_050 Hb_005839_040--Hb_008453_050 Hb_005839_040--Hb_072771_010 Hb_005839_040--Hb_001345_050 Hb_001472_150 Hb_001472_150 Hb_005839_040--Hb_001472_150 Hb_001981_050 Hb_001981_050 Hb_185811_010--Hb_001981_050 Hb_000318_310 Hb_000318_310 Hb_185811_010--Hb_000318_310 Hb_185811_010--Hb_001345_050 Hb_185811_010--Hb_072771_010 Hb_003855_060 Hb_003855_060 Hb_185811_010--Hb_003855_060 Hb_003913_120 Hb_003913_120 Hb_000803_080--Hb_003913_120 Hb_028491_010 Hb_028491_010 Hb_000803_080--Hb_028491_010 Hb_004607_110 Hb_004607_110 Hb_000803_080--Hb_004607_110 Hb_147028_010 Hb_147028_010 Hb_000803_080--Hb_147028_010 Hb_009225_060 Hb_009225_060 Hb_009233_020--Hb_009225_060 Hb_000077_020 Hb_000077_020 Hb_009233_020--Hb_000077_020 Hb_009233_020--Hb_085682_010 Hb_004880_020 Hb_004880_020 Hb_009233_020--Hb_004880_020 Hb_003734_070 Hb_003734_070 Hb_009233_020--Hb_003734_070 Hb_009233_020--Hb_000329_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.128204 8.67478 11.1763 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 17.4099

CAGE analysis