Hb_004807_020

Information

Type -
Description -
Location Contig4807: 21716-30307
Sequence    

Annotation

kegg
ID cit:102629041
description transcription initiation factor TFIID subunit 14b-like
nr
ID XP_012084417.1
description PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
swissprot
ID Q9FH40
description Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana GN=TAF14B PE=1 SV=1
trembl
ID A0A067JUP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19627 PE=4 SV=1
Gene Ontology
ID GO:0006355
description transcription initiation factor tfiid subunit 14b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44721: 21754-30189 , PASA_asmbl_44722: 28729-28901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004807_020 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
2 Hb_001025_090 0.0549699064 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
3 Hb_006615_050 0.0642492156 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
4 Hb_001025_120 0.0717248188 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
5 Hb_171900_090 0.0724413675 - - conserved hypothetical protein [Ricinus communis]
6 Hb_146255_020 0.0736122102 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
7 Hb_018790_020 0.0758918468 - - protein kinase, putative [Ricinus communis]
8 Hb_002343_040 0.0797679689 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001863_380 0.0801422228 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
10 Hb_000176_020 0.0810019637 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
11 Hb_000789_320 0.0831720839 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
12 Hb_004312_010 0.083684666 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
13 Hb_000300_260 0.0844587003 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
14 Hb_001077_070 0.0846208246 - - 60S ribosomal protein L9, putative [Ricinus communis]
15 Hb_002272_050 0.0891185211 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
16 Hb_001723_150 0.0901142275 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
17 Hb_000144_070 0.0901905456 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003861_060 0.090506003 - - PREDICTED: treacle protein [Jatropha curcas]
19 Hb_000875_080 0.0910822792 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
20 Hb_032202_100 0.0919705117 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004807_020 Hb_004807_020 Hb_001025_090 Hb_001025_090 Hb_004807_020--Hb_001025_090 Hb_006615_050 Hb_006615_050 Hb_004807_020--Hb_006615_050 Hb_001025_120 Hb_001025_120 Hb_004807_020--Hb_001025_120 Hb_171900_090 Hb_171900_090 Hb_004807_020--Hb_171900_090 Hb_146255_020 Hb_146255_020 Hb_004807_020--Hb_146255_020 Hb_018790_020 Hb_018790_020 Hb_004807_020--Hb_018790_020 Hb_000270_470 Hb_000270_470 Hb_001025_090--Hb_000270_470 Hb_001025_090--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_001025_090--Hb_000176_020 Hb_000789_320 Hb_000789_320 Hb_001025_090--Hb_000789_320 Hb_000875_080 Hb_000875_080 Hb_001025_090--Hb_000875_080 Hb_001077_070 Hb_001077_070 Hb_006615_050--Hb_001077_070 Hb_004312_010 Hb_004312_010 Hb_006615_050--Hb_004312_010 Hb_006615_050--Hb_171900_090 Hb_007007_040 Hb_007007_040 Hb_006615_050--Hb_007007_040 Hb_006615_050--Hb_000789_320 Hb_001025_120--Hb_018790_020 Hb_002716_060 Hb_002716_060 Hb_001025_120--Hb_002716_060 Hb_000676_070 Hb_000676_070 Hb_001025_120--Hb_000676_070 Hb_007894_150 Hb_007894_150 Hb_001025_120--Hb_007894_150 Hb_000028_520 Hb_000028_520 Hb_001025_120--Hb_000028_520 Hb_171900_090--Hb_000789_320 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_171900_090--Hb_000176_020 Hb_006061_040 Hb_006061_040 Hb_146255_020--Hb_006061_040 Hb_002343_040 Hb_002343_040 Hb_146255_020--Hb_002343_040 Hb_146255_020--Hb_001025_090 Hb_001105_170 Hb_001105_170 Hb_146255_020--Hb_001105_170 Hb_001804_090 Hb_001804_090 Hb_146255_020--Hb_001804_090 Hb_018790_020--Hb_007894_150 Hb_018790_020--Hb_000028_520 Hb_018790_020--Hb_002716_060 Hb_000365_230 Hb_000365_230 Hb_018790_020--Hb_000365_230 Hb_004109_320 Hb_004109_320 Hb_018790_020--Hb_004109_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49692 5.78135 14.601 7.14088 5.53652 3.96948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.47019 9.56941 5.09507 6.28612 5.88894

CAGE analysis