Hb_004813_010

Information

Type -
Description -
Location Contig4813: 6410-12265
Sequence    

Annotation

kegg
ID rcu:RCOM_0814320
description nucleic acid binding protein, putative
nr
ID XP_002518811.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q5F416
description TIMELESS-interacting protein OS=Gallus gallus GN=TIPIN PE=2 SV=1
trembl
ID B9RY44
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0814320 PE=4 SV=1
Gene Ontology
ID GO:0046872
description timeless-interacting protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44750: 6395-12232
cDNA
(Sanger)
(ID:Location)		 033_D19.ab1: 9057-12232

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004813_010 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_001493_100 0.0686433395 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
3 Hb_001514_020 0.0772827252 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
4 Hb_004096_170 0.078294301 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
5 Hb_002044_090 0.0802206846 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
6 Hb_000847_070 0.0829194502 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
7 Hb_000062_230 0.0833680111 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
8 Hb_007992_030 0.0837029831 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
9 Hb_001269_150 0.0871443919 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
10 Hb_178968_150 0.0913805541 - - zinc finger protein, putative [Ricinus communis]
11 Hb_002249_140 0.0918325212 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
12 Hb_000179_250 0.0919676982 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
13 Hb_000172_120 0.0928655261 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
14 Hb_000771_110 0.0933025175 - - protein phosphatase 2C [Hevea brasiliensis]
15 Hb_005754_020 0.0935877878 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
16 Hb_000117_040 0.0944485079 - - 30S ribosomal protein S6A [Hevea brasiliensis]
17 Hb_002377_040 0.095668439 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_004204_030 0.0974121057 - - unknown [Populus trichocarpa]
19 Hb_000345_560 0.0975574713 - - -
20 Hb_005389_140 0.0982784076 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004813_010 Hb_004813_010 Hb_001493_100 Hb_001493_100 Hb_004813_010--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_004813_010--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070 Hb_000062_230 Hb_000062_230 Hb_004813_010--Hb_000062_230 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_000714_020 Hb_000714_020 Hb_001493_100--Hb_000714_020 Hb_000784_090 Hb_000784_090 Hb_001493_100--Hb_000784_090 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_001514_020--Hb_000847_070 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_004502_030 Hb_004502_030 Hb_001514_020--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_004096_170--Hb_000847_070 Hb_007441_340 Hb_007441_340 Hb_004096_170--Hb_007441_340 Hb_003453_020 Hb_003453_020 Hb_004096_170--Hb_003453_020 Hb_000172_120 Hb_000172_120 Hb_004096_170--Hb_000172_120 Hb_004096_170--Hb_002044_090 Hb_002044_090--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002044_090--Hb_005754_020 Hb_002377_040 Hb_002377_040 Hb_002044_090--Hb_002377_040 Hb_000176_140 Hb_000176_140 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_003352_050 Hb_003352_050 Hb_002044_090--Hb_003352_050 Hb_000847_070--Hb_004502_030 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_000062_230--Hb_002377_040 Hb_000062_230--Hb_005754_020 Hb_004374_010 Hb_004374_010 Hb_000062_230--Hb_004374_010 Hb_000062_230--Hb_003352_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.1436 11.2629 9.30546 7.54735 82.8794 60.3395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.1648 51.2071 37.3175 10.6377 4.89962

CAGE analysis