Hb_004829_020

Information

Type -
Description -
Location Contig4829: 21391-25533
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004829_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_012340_040 0.0079131879 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]
3 Hb_000795_010 0.1092447387 - - -
4 Hb_004282_030 0.1800079217 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
5 Hb_000174_280 0.1920663135 - - -
6 Hb_007761_010 0.2035498398 - - -
7 Hb_128173_010 0.2036959831 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
8 Hb_111332_010 0.2068805571 - - Dihydroneopterin aldolase [Morus notabilis]
9 Hb_105480_010 0.209781771 - - -
10 Hb_006692_050 0.2154156227 - - Chloroplastic lipocalin [Theobroma cacao]
11 Hb_005542_020 0.2166376159 - - lupus la ribonucleoprotein, putative [Ricinus communis]
12 Hb_003847_010 0.2193997062 - - -
13 Hb_062858_010 0.229965377 - - heat-shock protein, putative [Ricinus communis]
14 Hb_013727_010 0.2355099276 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
15 Hb_042026_010 0.2418733545 - - RNA binding protein, putative [Ricinus communis]
16 Hb_046609_010 0.2420175955 - - -
17 Hb_000230_340 0.2453693537 - - Transcription elongation factor, putative [Ricinus communis]
18 Hb_129358_010 0.2512384606 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
19 Hb_003623_020 0.2593826549 - - -
20 Hb_007639_010 0.2616044911 - - hypothetical protein JCGZ_11284 [Jatropha curcas]

Gene co-expression network

sample Hb_004829_020 Hb_004829_020 Hb_012340_040 Hb_012340_040 Hb_004829_020--Hb_012340_040 Hb_000795_010 Hb_000795_010 Hb_004829_020--Hb_000795_010 Hb_004282_030 Hb_004282_030 Hb_004829_020--Hb_004282_030 Hb_000174_280 Hb_000174_280 Hb_004829_020--Hb_000174_280 Hb_007761_010 Hb_007761_010 Hb_004829_020--Hb_007761_010 Hb_128173_010 Hb_128173_010 Hb_004829_020--Hb_128173_010 Hb_012340_040--Hb_000795_010 Hb_012340_040--Hb_004282_030 Hb_012340_040--Hb_000174_280 Hb_012340_040--Hb_007761_010 Hb_012340_040--Hb_128173_010 Hb_006692_050 Hb_006692_050 Hb_000795_010--Hb_006692_050 Hb_000795_010--Hb_007761_010 Hb_000795_010--Hb_128173_010 Hb_042026_010 Hb_042026_010 Hb_000795_010--Hb_042026_010 Hb_010997_050 Hb_010997_050 Hb_004282_030--Hb_010997_050 Hb_098842_010 Hb_098842_010 Hb_004282_030--Hb_098842_010 Hb_000004_140 Hb_000004_140 Hb_004282_030--Hb_000004_140 Hb_124567_010 Hb_124567_010 Hb_004282_030--Hb_124567_010 Hb_003847_010 Hb_003847_010 Hb_000174_280--Hb_003847_010 Hb_001226_080 Hb_001226_080 Hb_000174_280--Hb_001226_080 Hb_062858_010 Hb_062858_010 Hb_000174_280--Hb_062858_010 Hb_002240_100 Hb_002240_100 Hb_000174_280--Hb_002240_100 Hb_007761_010--Hb_128173_010 Hb_111332_010 Hb_111332_010 Hb_007761_010--Hb_111332_010 Hb_105480_010 Hb_105480_010 Hb_007761_010--Hb_105480_010 Hb_005542_020 Hb_005542_020 Hb_007761_010--Hb_005542_020 Hb_007761_010--Hb_006692_050 Hb_013727_010 Hb_013727_010 Hb_007761_010--Hb_013727_010 Hb_128173_010--Hb_111332_010 Hb_128173_010--Hb_105480_010 Hb_128173_010--Hb_005542_020 Hb_128173_010--Hb_006692_050 Hb_128173_010--Hb_013727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0354608 0.274532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0270479 0

CAGE analysis