Hb_004832_010

Information

Type -
Description -
Location Contig4832: 2669-5781
Sequence    

Annotation

kegg
ID rcu:RCOM_0384750
description hypothetical protein
nr
ID XP_002528600.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRI1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0384750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44850: 3077-5551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004832_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001310_060 0.0991122082 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_000359_180 0.0999176175 - - conserved hypothetical protein [Ricinus communis]
4 Hb_019570_010 0.1048580589 - - lyase, putative [Ricinus communis]
5 Hb_001500_080 0.1089341661 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
6 Hb_004446_060 0.110352622 - - neutral/alkaline invertase [Manihot esculenta]
7 Hb_001437_260 0.1107528549 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
8 Hb_000941_010 0.1110490671 - - hypothetical protein RCOM_0504460 [Ricinus communis]
9 Hb_004592_010 0.111386904 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
10 Hb_000732_220 0.1131905061 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
11 Hb_006615_220 0.1155589403 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
12 Hb_002805_180 0.1212667878 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001284_070 0.1275383342 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000731_280 0.1281545482 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
15 Hb_001104_020 0.1288819871 - - DNA binding protein, putative [Ricinus communis]
16 Hb_005144_060 0.1289210459 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
17 Hb_002851_070 0.1291588643 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
18 Hb_002918_120 0.1308214187 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_003592_060 0.132439391 - - hypothetical protein F383_11017 [Gossypium arboreum]
20 Hb_000343_010 0.1342376293 - - F3F9.11 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_004832_010 Hb_004832_010 Hb_001310_060 Hb_001310_060 Hb_004832_010--Hb_001310_060 Hb_000359_180 Hb_000359_180 Hb_004832_010--Hb_000359_180 Hb_019570_010 Hb_019570_010 Hb_004832_010--Hb_019570_010 Hb_001500_080 Hb_001500_080 Hb_004832_010--Hb_001500_080 Hb_004446_060 Hb_004446_060 Hb_004832_010--Hb_004446_060 Hb_001437_260 Hb_001437_260 Hb_004832_010--Hb_001437_260 Hb_001284_070 Hb_001284_070 Hb_001310_060--Hb_001284_070 Hb_080147_070 Hb_080147_070 Hb_001310_060--Hb_080147_070 Hb_004607_020 Hb_004607_020 Hb_001310_060--Hb_004607_020 Hb_000205_180 Hb_000205_180 Hb_001310_060--Hb_000205_180 Hb_002700_030 Hb_002700_030 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300 Hb_002805_180 Hb_002805_180 Hb_000359_180--Hb_002805_180 Hb_000732_220 Hb_000732_220 Hb_000359_180--Hb_000732_220 Hb_000359_180--Hb_001310_060 Hb_000359_180--Hb_000077_300 Hb_004592_010 Hb_004592_010 Hb_000359_180--Hb_004592_010 Hb_019570_010--Hb_000732_220 Hb_019570_010--Hb_004592_010 Hb_001104_020 Hb_001104_020 Hb_019570_010--Hb_001104_020 Hb_019570_010--Hb_002805_180 Hb_000008_150 Hb_000008_150 Hb_019570_010--Hb_000008_150 Hb_005144_060 Hb_005144_060 Hb_019570_010--Hb_005144_060 Hb_009693_010 Hb_009693_010 Hb_001500_080--Hb_009693_010 Hb_000934_240 Hb_000934_240 Hb_001500_080--Hb_000934_240 Hb_000880_040 Hb_000880_040 Hb_001500_080--Hb_000880_040 Hb_000260_750 Hb_000260_750 Hb_001500_080--Hb_000260_750 Hb_002851_070 Hb_002851_070 Hb_001500_080--Hb_002851_070 Hb_002918_120 Hb_002918_120 Hb_004446_060--Hb_002918_120 Hb_004446_060--Hb_001437_260 Hb_007007_130 Hb_007007_130 Hb_004446_060--Hb_007007_130 Hb_004446_060--Hb_002851_070 Hb_021346_020 Hb_021346_020 Hb_004446_060--Hb_021346_020 Hb_000941_010 Hb_000941_010 Hb_001437_260--Hb_000941_010 Hb_001437_260--Hb_002805_180 Hb_001437_260--Hb_002918_120 Hb_001437_260--Hb_001104_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128484 0.93231 9.4144 4.45262 0.0206216 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0470435 0.148006 0 3.25418 3.42047

CAGE analysis