Hb_004834_020

Information

Type -
Description -
Location Contig4834: 15565-16947
Sequence    

Annotation

kegg
ID tcc:TCM_021288
description Pathogenesis-related protein 10.5
nr
ID NP_001295743.1
description major allergen Pru ar 1-like [Jatropha curcas]
swissprot
ID O50001
description Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1
trembl
ID D2D960
description Major allergen Pru ar 1-like protein OS=Jatropha curcas GN=JCGZ_18949 PE=2 SV=1
Gene Ontology
ID GO:0050896
description major allergen pru ar 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44851: 15617-17001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004834_020 0.0 - - major allergen Pru ar 1-like [Jatropha curcas]
2 Hb_177880_010 0.0440181533 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_126535_010 0.0549949992 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
4 Hb_007320_040 0.057132098 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
5 Hb_124247_030 0.0729960791 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
6 Hb_175167_020 0.0827684622 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002966_030 0.0908280181 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001053_010 0.0947943395 - - PREDICTED: polygalacturonase-like [Jatropha curcas]
9 Hb_153457_010 0.1054711172 - - Miraculin precursor, putative [Ricinus communis]
10 Hb_000021_090 0.1069694447 - - -
11 Hb_028008_010 0.107595116 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
12 Hb_002747_010 0.1087915558 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
13 Hb_025490_030 0.1113007925 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
14 Hb_007897_040 0.1141583899 - - ATP binding protein, putative [Ricinus communis]
15 Hb_006153_190 0.114799004 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
16 Hb_012532_020 0.117351616 - - Isoflavone reductase, putative [Ricinus communis]
17 Hb_000671_010 0.1175225042 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
18 Hb_002757_050 0.1176408855 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
19 Hb_011161_060 0.1176879487 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
20 Hb_000205_290 0.1196249471 - - -

Gene co-expression network

sample Hb_004834_020 Hb_004834_020 Hb_177880_010 Hb_177880_010 Hb_004834_020--Hb_177880_010 Hb_126535_010 Hb_126535_010 Hb_004834_020--Hb_126535_010 Hb_007320_040 Hb_007320_040 Hb_004834_020--Hb_007320_040 Hb_124247_030 Hb_124247_030 Hb_004834_020--Hb_124247_030 Hb_175167_020 Hb_175167_020 Hb_004834_020--Hb_175167_020 Hb_002966_030 Hb_002966_030 Hb_004834_020--Hb_002966_030 Hb_177880_010--Hb_007320_040 Hb_177880_010--Hb_126535_010 Hb_177880_010--Hb_124247_030 Hb_177880_010--Hb_175167_020 Hb_177880_010--Hb_002966_030 Hb_126535_010--Hb_175167_020 Hb_126535_010--Hb_124247_030 Hb_126535_010--Hb_007320_040 Hb_011161_060 Hb_011161_060 Hb_126535_010--Hb_011161_060 Hb_007320_040--Hb_002966_030 Hb_007320_040--Hb_124247_030 Hb_002747_010 Hb_002747_010 Hb_007320_040--Hb_002747_010 Hb_025490_030 Hb_025490_030 Hb_124247_030--Hb_025490_030 Hb_000021_090 Hb_000021_090 Hb_124247_030--Hb_000021_090 Hb_153457_010 Hb_153457_010 Hb_175167_020--Hb_153457_010 Hb_000513_100 Hb_000513_100 Hb_175167_020--Hb_000513_100 Hb_175167_020--Hb_002966_030 Hb_175167_020--Hb_002747_010 Hb_028008_010 Hb_028008_010 Hb_175167_020--Hb_028008_010 Hb_002966_030--Hb_002747_010 Hb_002966_030--Hb_153457_010 Hb_012779_010 Hb_012779_010 Hb_002966_030--Hb_012779_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.245928 0.987444 0.0371591 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.09563 0

CAGE analysis