Hb_004835_020

Information

Type -
Description -
Location Contig4835: 74556-77657
Sequence    

Annotation

kegg
ID rcu:RCOM_1452420
description serine/threonine-protein kinase bri1, putative (EC:1.3.1.74)
nr
ID XP_011020398.1
description PREDICTED: receptor-like protein 12 [Populus euphratica]
swissprot
ID Q9SHI2
description Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2
trembl
ID B9RG99
description Serine/threonine-protein kinase bri1, putative OS=Ricinus communis GN=RCOM_1452420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44852: 74538-75017 , PASA_asmbl_44853: 76414-76610 , PASA_asmbl_44854: 76699-76954 , PASA_asmbl_44856: 77338-78338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004835_020 0.0 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
2 Hb_102179_010 0.0441464182 - - protein binding protein, putative [Ricinus communis]
3 Hb_005569_010 0.0469109468 - - Heme-binding protein, putative [Ricinus communis]
4 Hb_000329_440 0.0704172327 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
5 Hb_000958_090 0.0718431559 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
6 Hb_000520_040 0.0767319146 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
7 Hb_001047_210 0.0785866777 - - PSI reaction center subunit II [Citrus sinensis]
8 Hb_018591_020 0.0799476699 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_000424_140 0.0812863805 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
10 Hb_002246_030 0.0815875892 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_000984_160 0.0828363784 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
12 Hb_003195_080 0.0841851573 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
13 Hb_001098_040 0.0854447742 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
14 Hb_005694_120 0.085740968 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
15 Hb_173387_010 0.0868612256 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
16 Hb_025557_060 0.0873312163 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
17 Hb_000046_120 0.0902357468 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
18 Hb_002182_010 0.0903275477 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]
19 Hb_000500_240 0.0905909693 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000847_030 0.0906961619 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004835_020 Hb_004835_020 Hb_102179_010 Hb_102179_010 Hb_004835_020--Hb_102179_010 Hb_005569_010 Hb_005569_010 Hb_004835_020--Hb_005569_010 Hb_000329_440 Hb_000329_440 Hb_004835_020--Hb_000329_440 Hb_000958_090 Hb_000958_090 Hb_004835_020--Hb_000958_090 Hb_000520_040 Hb_000520_040 Hb_004835_020--Hb_000520_040 Hb_001047_210 Hb_001047_210 Hb_004835_020--Hb_001047_210 Hb_002246_030 Hb_002246_030 Hb_102179_010--Hb_002246_030 Hb_002182_010 Hb_002182_010 Hb_102179_010--Hb_002182_010 Hb_000500_240 Hb_000500_240 Hb_102179_010--Hb_000500_240 Hb_102179_010--Hb_001047_210 Hb_102179_010--Hb_000520_040 Hb_000984_160 Hb_000984_160 Hb_005569_010--Hb_000984_160 Hb_000424_140 Hb_000424_140 Hb_005569_010--Hb_000424_140 Hb_003195_080 Hb_003195_080 Hb_005569_010--Hb_003195_080 Hb_005569_010--Hb_000329_440 Hb_005569_010--Hb_000958_090 Hb_000329_440--Hb_000520_040 Hb_001098_040 Hb_001098_040 Hb_000329_440--Hb_001098_040 Hb_000329_440--Hb_000500_240 Hb_000329_440--Hb_102179_010 Hb_005694_160 Hb_005694_160 Hb_000329_440--Hb_005694_160 Hb_026549_060 Hb_026549_060 Hb_000958_090--Hb_026549_060 Hb_000958_090--Hb_000424_140 Hb_000958_090--Hb_001047_210 Hb_173387_010 Hb_173387_010 Hb_000958_090--Hb_173387_010 Hb_000520_040--Hb_000500_240 Hb_000520_040--Hb_001047_210 Hb_008536_020 Hb_008536_020 Hb_000520_040--Hb_008536_020 Hb_005337_100 Hb_005337_100 Hb_000520_040--Hb_005337_100 Hb_060253_010 Hb_060253_010 Hb_000520_040--Hb_060253_010 Hb_001047_210--Hb_002246_030 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_001047_210--Hb_000500_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0123555 2.13319 6.90198 7.54213 0.0173436 0.0114281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0140069 0 0 0.756178 14.0954

CAGE analysis