Hb_004837_010

Information

Type -
Description -
Location Contig4837: 42541-45494
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26630g
description POPTRDRAFT_706284; hypothetical protein
nr
ID XP_012089991.1
description PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
swissprot
ID Q70E96
description Aldehyde dehydrogenase family 3 member F1 OS=Arabidopsis thaliana GN=ALDH3F1 PE=2 SV=2
trembl
ID A0A067JQ12
description Aldehyde dehydrogenase OS=Jatropha curcas GN=JCGZ_25916 PE=3 SV=1
Gene Ontology
ID GO:0004030
description aldehyde dehydrogenase family 3 member f1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_010 0.0 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
2 Hb_000179_010 0.0351136719 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
3 Hb_004032_400 0.0466888574 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
4 Hb_001307_050 0.0534860765 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
5 Hb_158001_010 0.0550344386 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
6 Hb_085682_010 0.0555069601 - - -
7 Hb_146255_030 0.0576243152 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
8 Hb_003734_070 0.0589489252 - - chlorophyll A/B binding protein, putative [Ricinus communis]
9 Hb_001507_060 0.0598177604 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
10 Hb_003913_120 0.0620042656 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
11 Hb_001295_070 0.063358117 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
12 Hb_002328_080 0.0636950419 - - short-chain dehydrogenase, putative [Ricinus communis]
13 Hb_029991_010 0.0659795495 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
14 Hb_009233_020 0.0688180257 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
15 Hb_000418_130 0.0689112691 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
16 Hb_000077_020 0.0699184038 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000844_080 0.0716177355 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
18 Hb_000497_050 0.0722082895 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
19 Hb_005743_050 0.0723426311 - - unnamed protein product [Coffea canephora]
20 Hb_001775_020 0.0724063023 - - hypothetical protein JCGZ_18787 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_010 Hb_004837_010 Hb_000179_010 Hb_000179_010 Hb_004837_010--Hb_000179_010 Hb_004032_400 Hb_004032_400 Hb_004837_010--Hb_004032_400 Hb_001307_050 Hb_001307_050 Hb_004837_010--Hb_001307_050 Hb_158001_010 Hb_158001_010 Hb_004837_010--Hb_158001_010 Hb_085682_010 Hb_085682_010 Hb_004837_010--Hb_085682_010 Hb_146255_030 Hb_146255_030 Hb_004837_010--Hb_146255_030 Hb_000251_150 Hb_000251_150 Hb_000179_010--Hb_000251_150 Hb_000179_010--Hb_001307_050 Hb_000179_010--Hb_158001_010 Hb_000046_400 Hb_000046_400 Hb_000179_010--Hb_000046_400 Hb_029991_010 Hb_029991_010 Hb_000179_010--Hb_029991_010 Hb_004032_400--Hb_146255_030 Hb_000418_130 Hb_000418_130 Hb_004032_400--Hb_000418_130 Hb_002752_020 Hb_002752_020 Hb_004032_400--Hb_002752_020 Hb_009588_010 Hb_009588_010 Hb_004032_400--Hb_009588_010 Hb_002028_020 Hb_002028_020 Hb_004032_400--Hb_002028_020 Hb_000497_050 Hb_000497_050 Hb_001307_050--Hb_000497_050 Hb_001307_050--Hb_029991_010 Hb_001307_050--Hb_146255_030 Hb_004338_050 Hb_004338_050 Hb_001307_050--Hb_004338_050 Hb_000987_030 Hb_000987_030 Hb_158001_010--Hb_000987_030 Hb_005743_050 Hb_005743_050 Hb_158001_010--Hb_005743_050 Hb_158001_010--Hb_085682_010 Hb_001295_070 Hb_001295_070 Hb_158001_010--Hb_001295_070 Hb_001507_060 Hb_001507_060 Hb_158001_010--Hb_001507_060 Hb_000329_120 Hb_000329_120 Hb_085682_010--Hb_000329_120 Hb_009233_020 Hb_009233_020 Hb_085682_010--Hb_009233_020 Hb_085682_010--Hb_001507_060 Hb_000077_020 Hb_000077_020 Hb_085682_010--Hb_000077_020 Hb_146255_030--Hb_002752_020 Hb_146255_030--Hb_000497_050 Hb_002534_020 Hb_002534_020 Hb_146255_030--Hb_002534_020 Hb_001277_350 Hb_001277_350 Hb_146255_030--Hb_001277_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0494745 2.76556 2.26206 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.13452

CAGE analysis