Hb_004837_030

Information

Type -
Description -
Location Contig4837: 53708-58820
Sequence    

Annotation

kegg
ID rcu:RCOM_1578370
description tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative (EC:2.1.1.61)
nr
ID XP_012089993.1
description PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
swissprot
ID B2S125
description tRNA-specific 2-thiouridylase MnmA OS=Borrelia hermsii (strain HS1 / DAH) GN=mnmA PE=3 SV=2
trembl
ID A0A067JE32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25918 PE=3 SV=1
Gene Ontology
ID GO:0004808
description mitochondrial trna-specific 2-thiouridylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44860: 55955-58808 , PASA_asmbl_44861: 53708-58797 , PASA_asmbl_44862: 53864-58777
cDNA
(Sanger)
(ID:Location)		 005_D21.ab1: 57717-58806 , 026_P12.ab1: 58101-58806

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_030 0.0 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
2 Hb_009694_010 0.0758971566 - - conserved hypothetical protein [Ricinus communis]
3 Hb_163950_030 0.0783864507 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
4 Hb_007632_030 0.0801112533 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
5 Hb_028227_020 0.0817975074 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
6 Hb_002893_070 0.0867225002 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
7 Hb_001348_180 0.0875219631 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
8 Hb_054865_120 0.089039574 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
9 Hb_005847_060 0.0892169231 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
10 Hb_002687_130 0.0915696126 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
11 Hb_001959_070 0.0923072751 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
12 Hb_007163_070 0.0935646944 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
13 Hb_005306_170 0.0949922538 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
14 Hb_006694_020 0.0957488073 - - PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
15 Hb_111985_050 0.0965932215 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
16 Hb_001157_020 0.0971574115 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
17 Hb_000342_130 0.1002345965 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
18 Hb_001579_270 0.1005928228 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
19 Hb_000030_180 0.1020918845 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
20 Hb_000120_790 0.10365906 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_030 Hb_004837_030 Hb_009694_010 Hb_009694_010 Hb_004837_030--Hb_009694_010 Hb_163950_030 Hb_163950_030 Hb_004837_030--Hb_163950_030 Hb_007632_030 Hb_007632_030 Hb_004837_030--Hb_007632_030 Hb_028227_020 Hb_028227_020 Hb_004837_030--Hb_028227_020 Hb_002893_070 Hb_002893_070 Hb_004837_030--Hb_002893_070 Hb_001348_180 Hb_001348_180 Hb_004837_030--Hb_001348_180 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_163950_030--Hb_009694_010 Hb_004841_010 Hb_004841_010 Hb_163950_030--Hb_004841_010 Hb_000494_040 Hb_000494_040 Hb_163950_030--Hb_000494_040 Hb_002184_150 Hb_002184_150 Hb_163950_030--Hb_002184_150 Hb_000606_090 Hb_000606_090 Hb_163950_030--Hb_000606_090 Hb_000365_120 Hb_000365_120 Hb_007632_030--Hb_000365_120 Hb_009421_020 Hb_009421_020 Hb_007632_030--Hb_009421_020 Hb_156973_010 Hb_156973_010 Hb_007632_030--Hb_156973_010 Hb_007632_030--Hb_004841_010 Hb_000120_790 Hb_000120_790 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020 Hb_028227_020--Hb_001157_020 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_028227_020--Hb_000120_790 Hb_003440_060 Hb_003440_060 Hb_002893_070--Hb_003440_060 Hb_000080_120 Hb_000080_120 Hb_002893_070--Hb_000080_120 Hb_022693_140 Hb_022693_140 Hb_002893_070--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_002893_070--Hb_000224_160 Hb_000723_100 Hb_000723_100 Hb_002893_070--Hb_000723_100 Hb_003939_050 Hb_003939_050 Hb_002893_070--Hb_003939_050 Hb_001959_070 Hb_001959_070 Hb_001348_180--Hb_001959_070 Hb_001348_180--Hb_163950_030 Hb_000173_290 Hb_000173_290 Hb_001348_180--Hb_000173_290 Hb_004619_080 Hb_004619_080 Hb_001348_180--Hb_004619_080 Hb_007811_030 Hb_007811_030 Hb_001348_180--Hb_007811_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4129 5.8024 16.8744 11.0595 23.6297 27.1986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4793 28.2626 13.1226 8.27365 21.7431

CAGE analysis