Hb_004837_040

Information

Type -
Description -
Location Contig4837: 59791-61833
Sequence    

Annotation

kegg
ID pmum:103328908
description nucleolar GTP-binding protein 1-like
nr
ID XP_008229544.1
description PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
swissprot
ID Q9C6I8
description Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana GN=At1g50920 PE=2 SV=1
trembl
ID A0A061EYL8
description Nucleolar GTP-binding protein 1 OS=Theobroma cacao GN=TCM_025126 PE=3 SV=1
Gene Ontology
ID GO:0005730
description nucleolar gtp-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44863: 59005-62359 , PASA_asmbl_44864: 59005-62640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_040 0.0 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
2 Hb_000062_240 0.0545194178 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
3 Hb_000000_370 0.0605920138 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
4 Hb_002496_030 0.06326827 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
5 Hb_000203_160 0.0655337986 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
6 Hb_000629_010 0.0667665425 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
7 Hb_175338_030 0.0675210885 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
8 Hb_002026_180 0.0709258355 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
9 Hb_001269_550 0.0729743096 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
10 Hb_001789_090 0.0743349283 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
11 Hb_005993_020 0.0745825886 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
12 Hb_007163_090 0.0751892882 - - PREDICTED: protein spt2-like [Jatropha curcas]
13 Hb_000030_300 0.0754880707 - - Thioredoxin, putative [Ricinus communis]
14 Hb_000291_110 0.0755272169 - - eukaryotic translation initiation factor [Hevea brasiliensis]
15 Hb_000152_820 0.0782144235 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
16 Hb_002016_110 0.078430921 - - transducin family protein [Populus trichocarpa]
17 Hb_181235_010 0.078671017 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
18 Hb_008085_010 0.0790357759 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
19 Hb_000953_010 0.0790730305 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
20 Hb_000803_190 0.079075328 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_040 Hb_004837_040 Hb_000062_240 Hb_000062_240 Hb_004837_040--Hb_000062_240 Hb_000000_370 Hb_000000_370 Hb_004837_040--Hb_000000_370 Hb_002496_030 Hb_002496_030 Hb_004837_040--Hb_002496_030 Hb_000203_160 Hb_000203_160 Hb_004837_040--Hb_000203_160 Hb_000629_010 Hb_000629_010 Hb_004837_040--Hb_000629_010 Hb_175338_030 Hb_175338_030 Hb_004837_040--Hb_175338_030 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020 Hb_004785_060 Hb_004785_060 Hb_000000_370--Hb_004785_060 Hb_000859_060 Hb_000859_060 Hb_000000_370--Hb_000859_060 Hb_000085_100 Hb_000085_100 Hb_000000_370--Hb_000085_100 Hb_000062_250 Hb_000062_250 Hb_000000_370--Hb_000062_250 Hb_012807_050 Hb_012807_050 Hb_000000_370--Hb_012807_050 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_007951_050 Hb_007951_050 Hb_002496_030--Hb_007951_050 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_126643_020 Hb_126643_020 Hb_000203_160--Hb_126643_020 Hb_002685_010 Hb_002685_010 Hb_000203_160--Hb_002685_010 Hb_004907_110 Hb_004907_110 Hb_000203_160--Hb_004907_110 Hb_000554_020 Hb_000554_020 Hb_000203_160--Hb_000554_020 Hb_000203_160--Hb_002496_030 Hb_000808_270 Hb_000808_270 Hb_000629_010--Hb_000808_270 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_004355_020 Hb_004355_020 Hb_000629_010--Hb_004355_020 Hb_011218_040 Hb_011218_040 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020 Hb_002307_100 Hb_002307_100 Hb_175338_030--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_175338_030--Hb_002477_160 Hb_010175_020 Hb_010175_020 Hb_175338_030--Hb_010175_020 Hb_007757_110 Hb_007757_110 Hb_175338_030--Hb_007757_110 Hb_000619_080 Hb_000619_080 Hb_175338_030--Hb_000619_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.3042 41.1432 16.3248 20.2415 42.8906 58.7591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.7326 38.6596 62.3939 35.8875 16.5045

CAGE analysis