Hb_004837_050

Information

Type -
Description -
Location Contig4837: 62442-62687
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44863: 59005-62359 , PASA_asmbl_44864: 59005-62640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_050 0.0 - - -
2 Hb_002740_040 0.1292516577 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
3 Hb_000470_110 0.1302555999 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
4 Hb_000242_030 0.1306779643 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
5 Hb_001878_060 0.1355846525 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
6 Hb_002250_050 0.1407939467 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
7 Hb_087587_010 0.1424111597 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_004544_040 0.1467298724 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
9 Hb_002685_030 0.1468992093 - - PREDICTED: protein SMG7L [Jatropha curcas]
10 Hb_002874_090 0.1490272521 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
11 Hb_000197_030 0.1523173088 - - hypothetical protein RCOM_1447500 [Ricinus communis]
12 Hb_062416_010 0.1534947152 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
13 Hb_000950_040 0.157987501 - - cation-transporting atpase plant, putative [Ricinus communis]
14 Hb_001558_040 0.1595854701 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
15 Hb_062558_010 0.1611050104 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
16 Hb_000318_040 0.1623323607 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
17 Hb_005649_090 0.1630970075 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
18 Hb_000985_050 0.1643097479 - - PREDICTED: uncharacterized protein LOC105647985 isoform X1 [Jatropha curcas]
19 Hb_114943_020 0.1645299792 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
20 Hb_016461_020 0.1649338059 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004837_050 Hb_004837_050 Hb_002740_040 Hb_002740_040 Hb_004837_050--Hb_002740_040 Hb_000470_110 Hb_000470_110 Hb_004837_050--Hb_000470_110 Hb_000242_030 Hb_000242_030 Hb_004837_050--Hb_000242_030 Hb_001878_060 Hb_001878_060 Hb_004837_050--Hb_001878_060 Hb_002250_050 Hb_002250_050 Hb_004837_050--Hb_002250_050 Hb_087587_010 Hb_087587_010 Hb_004837_050--Hb_087587_010 Hb_002685_030 Hb_002685_030 Hb_002740_040--Hb_002685_030 Hb_002740_040--Hb_087587_010 Hb_014720_030 Hb_014720_030 Hb_002740_040--Hb_014720_030 Hb_002740_040--Hb_000470_110 Hb_000950_040 Hb_000950_040 Hb_002740_040--Hb_000950_040 Hb_114943_020 Hb_114943_020 Hb_002740_040--Hb_114943_020 Hb_002809_160 Hb_002809_160 Hb_000470_110--Hb_002809_160 Hb_004718_060 Hb_004718_060 Hb_000470_110--Hb_004718_060 Hb_000470_110--Hb_001878_060 Hb_011457_140 Hb_011457_140 Hb_000470_110--Hb_011457_140 Hb_000631_090 Hb_000631_090 Hb_000470_110--Hb_000631_090 Hb_054865_020 Hb_054865_020 Hb_000470_110--Hb_054865_020 Hb_000045_160 Hb_000045_160 Hb_000242_030--Hb_000045_160 Hb_025964_040 Hb_025964_040 Hb_000242_030--Hb_025964_040 Hb_000242_030--Hb_000470_110 Hb_000523_030 Hb_000523_030 Hb_000242_030--Hb_000523_030 Hb_000242_030--Hb_000631_090 Hb_016461_020 Hb_016461_020 Hb_001878_060--Hb_016461_020 Hb_000579_130 Hb_000579_130 Hb_001878_060--Hb_000579_130 Hb_002739_120 Hb_002739_120 Hb_001878_060--Hb_002739_120 Hb_008165_020 Hb_008165_020 Hb_001878_060--Hb_008165_020 Hb_001675_320 Hb_001675_320 Hb_001878_060--Hb_001675_320 Hb_001085_080 Hb_001085_080 Hb_001878_060--Hb_001085_080 Hb_001255_010 Hb_001255_010 Hb_002250_050--Hb_001255_010 Hb_017159_010 Hb_017159_010 Hb_002250_050--Hb_017159_010 Hb_002250_050--Hb_000523_030 Hb_003305_030 Hb_003305_030 Hb_002250_050--Hb_003305_030 Hb_009247_010 Hb_009247_010 Hb_002250_050--Hb_009247_010 Hb_000165_120 Hb_000165_120 Hb_087587_010--Hb_000165_120 Hb_000917_100 Hb_000917_100 Hb_087587_010--Hb_000917_100 Hb_010346_020 Hb_010346_020 Hb_087587_010--Hb_010346_020 Hb_002259_110 Hb_002259_110 Hb_087587_010--Hb_002259_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.52606 16.1272 9.72179 13.9976 2.00048 10.3522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97838 2.61879 0.658869 9.34861 6.33751

CAGE analysis