Hb_004837_110

Information

Type -
Description -
Location Contig4837: 126960-134347
Sequence    

Annotation

kegg
ID tcc:TCM_040698
description MATE efflux family protein isoform 1
nr
ID XP_012089999.1
description PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SYD6
description MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2
trembl
ID A0A067JDZ9
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_25922 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44869: 127701-134234 , PASA_asmbl_44870: 127696-134291 , PASA_asmbl_44871: 128143-128391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_110 0.0 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
2 Hb_007102_010 0.0615833644 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
3 Hb_002890_320 0.0657093002 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
4 Hb_000054_140 0.0856727363 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
5 Hb_001821_050 0.0946597001 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
6 Hb_028928_020 0.1011841816 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
7 Hb_002375_080 0.1014586581 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007007_090 0.1028117263 - - phospholipase d beta, putative [Ricinus communis]
9 Hb_004393_030 0.1035127365 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
10 Hb_006573_280 0.1056241914 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
11 Hb_005569_030 0.1062914026 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
12 Hb_033187_020 0.1102091599 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
13 Hb_001248_170 0.1119364486 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_000313_100 0.1128611451 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
15 Hb_000260_480 0.1142222547 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
16 Hb_004724_300 0.1183685725 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
17 Hb_000237_070 0.1184094182 - - Purple acid phosphatase precursor, putative [Ricinus communis]
18 Hb_012098_180 0.1189812175 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
19 Hb_175670_010 0.1193015494 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_005867_030 0.1195671777 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_110 Hb_004837_110 Hb_007102_010 Hb_007102_010 Hb_004837_110--Hb_007102_010 Hb_002890_320 Hb_002890_320 Hb_004837_110--Hb_002890_320 Hb_000054_140 Hb_000054_140 Hb_004837_110--Hb_000054_140 Hb_001821_050 Hb_001821_050 Hb_004837_110--Hb_001821_050 Hb_028928_020 Hb_028928_020 Hb_004837_110--Hb_028928_020 Hb_002375_080 Hb_002375_080 Hb_004837_110--Hb_002375_080 Hb_007102_010--Hb_001821_050 Hb_007102_010--Hb_002890_320 Hb_007102_010--Hb_002375_080 Hb_004724_300 Hb_004724_300 Hb_007102_010--Hb_004724_300 Hb_004112_050 Hb_004112_050 Hb_007102_010--Hb_004112_050 Hb_005569_030 Hb_005569_030 Hb_002890_320--Hb_005569_030 Hb_000313_100 Hb_000313_100 Hb_002890_320--Hb_000313_100 Hb_012098_180 Hb_012098_180 Hb_002890_320--Hb_012098_180 Hb_000237_070 Hb_000237_070 Hb_002890_320--Hb_000237_070 Hb_002370_060 Hb_002370_060 Hb_000054_140--Hb_002370_060 Hb_006573_280 Hb_006573_280 Hb_000054_140--Hb_006573_280 Hb_001198_160 Hb_001198_160 Hb_000054_140--Hb_001198_160 Hb_000836_220 Hb_000836_220 Hb_000054_140--Hb_000836_220 Hb_033187_020 Hb_033187_020 Hb_000054_140--Hb_033187_020 Hb_001821_050--Hb_004724_300 Hb_001677_120 Hb_001677_120 Hb_001821_050--Hb_001677_120 Hb_134022_010 Hb_134022_010 Hb_001821_050--Hb_134022_010 Hb_001821_050--Hb_002375_080 Hb_028928_020--Hb_033187_020 Hb_002097_130 Hb_002097_130 Hb_028928_020--Hb_002097_130 Hb_005074_010 Hb_005074_010 Hb_028928_020--Hb_005074_010 Hb_006736_040 Hb_006736_040 Hb_028928_020--Hb_006736_040 Hb_028928_020--Hb_000054_140 Hb_024650_010 Hb_024650_010 Hb_028928_020--Hb_024650_010 Hb_007007_090 Hb_007007_090 Hb_002375_080--Hb_007007_090 Hb_002375_080--Hb_001677_120 Hb_002375_080--Hb_002097_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.06043 65.9873 35.9566 30.2052 0.153765 0.0545353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0625614 0.00984652 0.0188765 13.7366 25.8387

CAGE analysis