Hb_004837_120

Information

Type -
Description -
Location Contig4837: 135802-137511
Sequence    

Annotation

kegg
ID cic:CICLE_v10004423mg
description hypothetical protein
nr
ID KDP22093.1
description hypothetical protein JCGZ_25924 [Jatropha curcas]
swissprot
ID Q10EL1
description Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1
trembl
ID A0A067JH09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25924 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_120 0.0 - - hypothetical protein JCGZ_25924 [Jatropha curcas]
2 Hb_005288_100 0.1311021746 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
3 Hb_036790_110 0.1461271227 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
4 Hb_002400_260 0.1525203214 - - catalytic, putative [Ricinus communis]
5 Hb_000389_170 0.1603968928 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_008727_060 0.163330308 - - Beta-glucosidase, putative [Ricinus communis]
7 Hb_002842_010 0.1641432805 - - sulfate transporter, putative [Ricinus communis]
8 Hb_005678_020 0.1645543764 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002421_150 0.1691076344 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
10 Hb_000708_020 0.1704831971 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_003008_020 0.171141781 - - auxin-responsive family protein [Populus trichocarpa]
12 Hb_000061_440 0.172421897 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_007666_010 0.1728376438 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
14 Hb_000347_320 0.174621669 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
15 Hb_003494_150 0.1748570909 - - Silicon transporter, putative [Ricinus communis]
16 Hb_008165_050 0.1756242015 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_002226_090 0.1762416772 - - Stachyose synthase precursor, putative [Ricinus communis]
18 Hb_004117_320 0.1767552836 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
19 Hb_173387_010 0.1773267668 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
20 Hb_003050_330 0.1784957464 - - hypothetical protein JCGZ_04591 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_120 Hb_004837_120 Hb_005288_100 Hb_005288_100 Hb_004837_120--Hb_005288_100 Hb_036790_110 Hb_036790_110 Hb_004837_120--Hb_036790_110 Hb_002400_260 Hb_002400_260 Hb_004837_120--Hb_002400_260 Hb_000389_170 Hb_000389_170 Hb_004837_120--Hb_000389_170 Hb_008727_060 Hb_008727_060 Hb_004837_120--Hb_008727_060 Hb_002842_010 Hb_002842_010 Hb_004837_120--Hb_002842_010 Hb_005288_100--Hb_036790_110 Hb_005678_020 Hb_005678_020 Hb_005288_100--Hb_005678_020 Hb_005288_100--Hb_008727_060 Hb_009315_010 Hb_009315_010 Hb_005288_100--Hb_009315_010 Hb_005288_100--Hb_000389_170 Hb_005843_010 Hb_005843_010 Hb_005288_100--Hb_005843_010 Hb_036790_110--Hb_005678_020 Hb_036790_110--Hb_009315_010 Hb_000462_010 Hb_000462_010 Hb_036790_110--Hb_000462_010 Hb_036790_110--Hb_005843_010 Hb_003008_020 Hb_003008_020 Hb_036790_110--Hb_003008_020 Hb_002400_260--Hb_002842_010 Hb_002421_150 Hb_002421_150 Hb_002400_260--Hb_002421_150 Hb_025557_060 Hb_025557_060 Hb_002400_260--Hb_025557_060 Hb_000373_160 Hb_000373_160 Hb_002400_260--Hb_000373_160 Hb_002400_260--Hb_005678_020 Hb_002400_260--Hb_005288_100 Hb_000389_170--Hb_008727_060 Hb_001699_110 Hb_001699_110 Hb_000389_170--Hb_001699_110 Hb_020367_040 Hb_020367_040 Hb_000389_170--Hb_020367_040 Hb_000708_020 Hb_000708_020 Hb_000389_170--Hb_000708_020 Hb_000389_170--Hb_002421_150 Hb_008727_060--Hb_009315_010 Hb_008727_060--Hb_036790_110 Hb_008727_060--Hb_005843_010 Hb_008727_060--Hb_001699_110 Hb_002842_010--Hb_025557_060 Hb_002842_010--Hb_000373_160 Hb_002842_010--Hb_002421_150 Hb_000002_500 Hb_000002_500 Hb_002842_010--Hb_000002_500 Hb_119600_030 Hb_119600_030 Hb_002842_010--Hb_119600_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.252783 0.217267 0.370366 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0554042 0 0.924809

CAGE analysis