Hb_004837_160

Information

Type -
Description -
Location Contig4837: 151583-155237
Sequence    

Annotation

kegg
ID rcu:RCOM_1578070
description heterogeneous nuclear ribonucleoprotein, putative
nr
ID XP_012090009.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
swissprot
ID Q60HC3
description Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3
trembl
ID A0A067JE05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25927 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein f-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44880: 152002-155171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_160 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
2 Hb_003349_090 0.0567088446 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
3 Hb_028515_010 0.0568846609 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
4 Hb_000373_130 0.0570259133 - - PREDICTED: protein FAM188A [Jatropha curcas]
5 Hb_002007_210 0.06779093 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
6 Hb_003697_040 0.0699840726 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
7 Hb_001222_080 0.0747554142 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
8 Hb_010812_120 0.0754785429 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
9 Hb_005488_200 0.0757017678 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
10 Hb_005568_120 0.0789380783 - - Prephenate dehydratase [Hevea brasiliensis]
11 Hb_002620_020 0.0790976734 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
12 Hb_011381_080 0.0797823553 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
13 Hb_000614_250 0.07990643 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
14 Hb_094836_010 0.0810619851 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
15 Hb_012423_030 0.0843288711 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001519_050 0.0845618658 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
17 Hb_000072_180 0.0855237316 - - PREDICTED: EVI5-like protein [Jatropha curcas]
18 Hb_000016_160 0.0861455213 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
19 Hb_002676_090 0.0861518916 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
20 Hb_089032_030 0.0881176533 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_004837_160 Hb_004837_160 Hb_003349_090 Hb_003349_090 Hb_004837_160--Hb_003349_090 Hb_028515_010 Hb_028515_010 Hb_004837_160--Hb_028515_010 Hb_000373_130 Hb_000373_130 Hb_004837_160--Hb_000373_130 Hb_002007_210 Hb_002007_210 Hb_004837_160--Hb_002007_210 Hb_003697_040 Hb_003697_040 Hb_004837_160--Hb_003697_040 Hb_001222_080 Hb_001222_080 Hb_004837_160--Hb_001222_080 Hb_010812_120 Hb_010812_120 Hb_003349_090--Hb_010812_120 Hb_003349_090--Hb_028515_010 Hb_003349_090--Hb_000373_130 Hb_004889_010 Hb_004889_010 Hb_003349_090--Hb_004889_010 Hb_089032_030 Hb_089032_030 Hb_003349_090--Hb_089032_030 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_028515_010--Hb_000373_130 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_001519_050 Hb_001519_050 Hb_000373_130--Hb_001519_050 Hb_000373_130--Hb_005568_120 Hb_000567_120 Hb_000567_120 Hb_000373_130--Hb_000567_120 Hb_015778_010 Hb_015778_010 Hb_002007_210--Hb_015778_010 Hb_010883_050 Hb_010883_050 Hb_002007_210--Hb_010883_050 Hb_152784_010 Hb_152784_010 Hb_002007_210--Hb_152784_010 Hb_002007_210--Hb_003349_090 Hb_009615_070 Hb_009615_070 Hb_002007_210--Hb_009615_070 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_011344_190 Hb_011344_190 Hb_001222_080--Hb_011344_190 Hb_000922_040 Hb_000922_040 Hb_001222_080--Hb_000922_040 Hb_000046_350 Hb_000046_350 Hb_001222_080--Hb_000046_350 Hb_001222_080--Hb_089032_030 Hb_008232_010 Hb_008232_010 Hb_001222_080--Hb_008232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.66005 12.0714 9.92396 18.9631 9.84749 16.846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.694 32.1225 32.7617 15.5679 14.3263

CAGE analysis