Hb_004837_180

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig4837: 166890-171896
Sequence    

Annotation

kegg
ID rcu:RCOM_1578050
description Nuclear transcription factor Y subunit A-1, putative
nr
ID XP_012090013.1
description PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LXV5
description Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1
trembl
ID B9RID0
description Nuclear transcription factor Y subunit A-1, putative OS=Ricinus communis GN=RCOM_1578050 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit a-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44883: 166975-168324 , PASA_asmbl_44884: 169858-171777
cDNA
(Sanger)
(ID:Location)		 005_B18.ab1: 170023-171305 , 020_G18.ab1: 170023-171331 , 023_L20.ab1: 170023-171147 , 040_B12.ab1: 170023-171185

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_180 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
2 Hb_005867_070 0.0452505324 - - DNA binding protein, putative [Ricinus communis]
3 Hb_007590_020 0.0466676805 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
4 Hb_003929_280 0.0497620481 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
5 Hb_001225_040 0.051324197 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
6 Hb_002217_110 0.0531647133 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
7 Hb_004236_050 0.0533009326 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
8 Hb_000339_040 0.0555548767 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
9 Hb_000340_400 0.0563763873 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
10 Hb_001456_060 0.0601837865 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
11 Hb_003030_060 0.0630215371 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
12 Hb_001720_040 0.0639989439 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001089_030 0.0647549213 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
14 Hb_003001_080 0.0658080536 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
15 Hb_003927_040 0.0659279062 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
16 Hb_000645_170 0.0659442951 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005653_090 0.0671080674 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
18 Hb_000329_370 0.0692976165 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
19 Hb_005730_040 0.0695353145 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
20 Hb_014834_150 0.0699904539 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_180 Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_004837_180--Hb_005867_070 Hb_007590_020 Hb_007590_020 Hb_004837_180--Hb_007590_020 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_001089_030 Hb_001089_030 Hb_007590_020--Hb_001089_030 Hb_007590_020--Hb_004236_050 Hb_007590_020--Hb_005730_040 Hb_007590_020--Hb_001225_040 Hb_003929_280--Hb_004236_050 Hb_003927_040 Hb_003927_040 Hb_003929_280--Hb_003927_040 Hb_012384_030 Hb_012384_030 Hb_003929_280--Hb_012384_030 Hb_000803_070 Hb_000803_070 Hb_003929_280--Hb_000803_070 Hb_003929_280--Hb_002217_110 Hb_005653_090 Hb_005653_090 Hb_001225_040--Hb_005653_090 Hb_006520_040 Hb_006520_040 Hb_001225_040--Hb_006520_040 Hb_001225_040--Hb_005730_040 Hb_003030_060 Hb_003030_060 Hb_001225_040--Hb_003030_060 Hb_011537_050 Hb_011537_050 Hb_001225_040--Hb_011537_050 Hb_000260_680 Hb_000260_680 Hb_002217_110--Hb_000260_680 Hb_001456_060 Hb_001456_060 Hb_002217_110--Hb_001456_060 Hb_002217_110--Hb_012384_030 Hb_001776_060 Hb_001776_060 Hb_002217_110--Hb_001776_060 Hb_000645_170 Hb_000645_170 Hb_004236_050--Hb_000645_170 Hb_004236_050--Hb_003927_040 Hb_012305_030 Hb_012305_030 Hb_004236_050--Hb_012305_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.49015 12.9949 12.0925 7.59647 9.05658 9.47873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.9691 11.1911 6.80502 9.05645 10.3398

CAGE analysis