Hb_004837_190

Information

Type -
Description -
Location Contig4837: 172250-175599
Sequence    

Annotation

kegg
ID tcc:TCM_040713
description Translocation protein-related
nr
ID XP_012090016.1
description PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
swissprot
ID O13787
description Translocation protein sec62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec62 PE=3 SV=1
trembl
ID A0A067JRE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25930 PE=4 SV=1
Gene Ontology
ID GO:0005886
description translocation protein sec62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44885: 172313-175521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_190 0.0 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
2 Hb_006620_020 0.0693356581 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
3 Hb_031527_100 0.06949469 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001341_120 0.0699315691 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
5 Hb_000913_050 0.0703059269 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
6 Hb_000538_100 0.0742411 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000618_030 0.0750266012 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
8 Hb_000933_090 0.0763172786 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
9 Hb_000523_050 0.0784134247 - - microsomal glutathione s-transferase, putative [Ricinus communis]
10 Hb_001369_180 0.0791125283 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
11 Hb_001444_010 0.0801319425 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
12 Hb_000358_250 0.0828347973 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
13 Hb_003030_070 0.0838483139 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
14 Hb_009646_030 0.0840441058 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000174_110 0.0857653385 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
16 Hb_054865_100 0.0861350499 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
17 Hb_001983_030 0.0868794252 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
18 Hb_001124_120 0.0876128696 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
19 Hb_002805_270 0.0879827073 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_003813_130 0.0881928743 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_190 Hb_004837_190 Hb_006620_020 Hb_006620_020 Hb_004837_190--Hb_006620_020 Hb_031527_100 Hb_031527_100 Hb_004837_190--Hb_031527_100 Hb_001341_120 Hb_001341_120 Hb_004837_190--Hb_001341_120 Hb_000913_050 Hb_000913_050 Hb_004837_190--Hb_000913_050 Hb_000538_100 Hb_000538_100 Hb_004837_190--Hb_000538_100 Hb_000618_030 Hb_000618_030 Hb_004837_190--Hb_000618_030 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_004055_150 Hb_004055_150 Hb_006620_020--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_005503_030 Hb_005503_030 Hb_031527_100--Hb_005503_030 Hb_031527_100--Hb_054865_100 Hb_008887_050 Hb_008887_050 Hb_031527_100--Hb_008887_050 Hb_000327_120 Hb_000327_120 Hb_031527_100--Hb_000327_120 Hb_000477_030 Hb_000477_030 Hb_031527_100--Hb_000477_030 Hb_030131_040 Hb_030131_040 Hb_001341_120--Hb_030131_040 Hb_000076_270 Hb_000076_270 Hb_001341_120--Hb_000076_270 Hb_002273_130 Hb_002273_130 Hb_001341_120--Hb_002273_130 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_001341_120--Hb_000913_050 Hb_001828_160 Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_006827_020 Hb_006827_020 Hb_000538_100--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_103012_010 Hb_103012_010 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_009627_010 Hb_009627_010 Hb_000618_030--Hb_009627_010 Hb_000025_110 Hb_000025_110 Hb_000618_030--Hb_000025_110 Hb_000618_030--Hb_001444_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000618_030--Hb_000538_100 Hb_000618_030--Hb_000879_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.6222 22.7501 41.4386 34.8503 93.2187 66.3075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.5695 38.7227 39.213 36.9442 28.0682

CAGE analysis