Hb_004837_200

Information

Type -
Description -
Location Contig4837: 176484-177726
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26450g
description POPTRDRAFT_752239; hypothetical protein
nr
ID XP_002299905.2
description hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GEZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26450g PE=4 SV=1
Gene Ontology
ID GO:0009507
description protoheme ix farnesyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_200 0.0 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
2 Hb_003078_070 0.0880516336 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
3 Hb_000836_420 0.117185166 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_189208_060 0.1180386005 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
5 Hb_001369_670 0.1185615672 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
6 Hb_000172_410 0.1228430966 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_001769_120 0.1233438674 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
8 Hb_000071_090 0.1260808867 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
9 Hb_000152_410 0.1292337422 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
10 Hb_001660_080 0.1317667048 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
11 Hb_000985_140 0.135628376 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
12 Hb_000454_080 0.1405018024 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
13 Hb_001623_410 0.1426909688 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
14 Hb_000359_260 0.1452151586 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
15 Hb_021254_020 0.1457494205 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_001160_050 0.1478374034 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
17 Hb_011918_030 0.1485161005 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
18 Hb_011794_050 0.1511843283 - - transcription factor, putative [Ricinus communis]
19 Hb_002374_030 0.15368011 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
20 Hb_028487_040 0.1547818409 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]

Gene co-expression network

sample Hb_004837_200 Hb_004837_200 Hb_003078_070 Hb_003078_070 Hb_004837_200--Hb_003078_070 Hb_000836_420 Hb_000836_420 Hb_004837_200--Hb_000836_420 Hb_189208_060 Hb_189208_060 Hb_004837_200--Hb_189208_060 Hb_001369_670 Hb_001369_670 Hb_004837_200--Hb_001369_670 Hb_000172_410 Hb_000172_410 Hb_004837_200--Hb_000172_410 Hb_001769_120 Hb_001769_120 Hb_004837_200--Hb_001769_120 Hb_000985_140 Hb_000985_140 Hb_003078_070--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_003078_070--Hb_021254_020 Hb_003078_070--Hb_000172_410 Hb_000071_090 Hb_000071_090 Hb_003078_070--Hb_000071_090 Hb_003078_070--Hb_000836_420 Hb_001160_050 Hb_001160_050 Hb_000836_420--Hb_001160_050 Hb_000836_420--Hb_189208_060 Hb_001660_080 Hb_001660_080 Hb_000836_420--Hb_001660_080 Hb_002374_030 Hb_002374_030 Hb_000836_420--Hb_002374_030 Hb_121540_010 Hb_121540_010 Hb_000836_420--Hb_121540_010 Hb_189208_060--Hb_001160_050 Hb_189208_060--Hb_002374_030 Hb_011794_050 Hb_011794_050 Hb_189208_060--Hb_011794_050 Hb_189208_060--Hb_001660_080 Hb_000152_410 Hb_000152_410 Hb_189208_060--Hb_000152_410 Hb_001369_670--Hb_000172_410 Hb_001369_670--Hb_003078_070 Hb_160653_010 Hb_160653_010 Hb_001369_670--Hb_160653_010 Hb_003060_150 Hb_003060_150 Hb_001369_670--Hb_003060_150 Hb_001369_670--Hb_121540_010 Hb_000172_410--Hb_121540_010 Hb_002400_020 Hb_002400_020 Hb_000172_410--Hb_002400_020 Hb_004109_240 Hb_004109_240 Hb_000172_410--Hb_004109_240 Hb_000172_410--Hb_001660_080 Hb_001769_120--Hb_000152_410 Hb_001769_120--Hb_000071_090 Hb_009907_020 Hb_009907_020 Hb_001769_120--Hb_009907_020 Hb_028487_040 Hb_028487_040 Hb_001769_120--Hb_028487_040 Hb_001769_120--Hb_001160_050 Hb_001769_120--Hb_000836_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54747 27.0529 33.1285 10.3963 0.341204 0.215482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.280653 0.0735306 0.129551 2.67589 8.46285

CAGE analysis