Hb_004837_230

Information

Type -
Description -
Location Contig4837: 194329-194664
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05720g
description POPTRDRAFT_650065; photosystem II 5 kD family protein
nr
ID ABK95667.1
description unknown [Populus trichocarpa]
swissprot
ID B3EWI4
description Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida PE=1 SV=1
trembl
ID A9PH14
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0009535
description photosystem ii 5 kda chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44892: 195280-197458
cDNA
(Sanger)
(ID:Location)		 030_C17.ab1: 194388-194744 , 034_H05.ab1: 194007-194744 , 034_L21.ab1: 194007-194744

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_230 0.0 - - unknown [Populus trichocarpa]
2 Hb_005605_010 0.0451293799 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
3 Hb_005245_110 0.0476515965 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
4 Hb_000083_020 0.0548623255 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_004525_010 0.0593466347 - - late embryogenesis abundant, putative [Ricinus communis]
6 Hb_007101_120 0.0602729855 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
7 Hb_000482_170 0.0607698478 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
8 Hb_003921_010 0.0634960591 - - conserved hypothetical protein [Ricinus communis]
9 Hb_020805_050 0.0660723687 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
10 Hb_000985_150 0.0677484123 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
11 Hb_006665_020 0.0679973653 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_006901_010 0.0716079504 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
13 Hb_001823_010 0.0738023074 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
14 Hb_002893_200 0.0802852838 - - aldehyde dehydrogenase, putative [Ricinus communis]
15 Hb_000334_290 0.08064277 - - monovalent cation:proton antiporter, putative [Ricinus communis]
16 Hb_002014_140 0.0823566455 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
17 Hb_000191_090 0.0830991644 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
18 Hb_000640_090 0.0846854204 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
19 Hb_008484_080 0.085666295 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
20 Hb_000047_100 0.0865418626 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004837_230 Hb_004837_230 Hb_005605_010 Hb_005605_010 Hb_004837_230--Hb_005605_010 Hb_005245_110 Hb_005245_110 Hb_004837_230--Hb_005245_110 Hb_000083_020 Hb_000083_020 Hb_004837_230--Hb_000083_020 Hb_004525_010 Hb_004525_010 Hb_004837_230--Hb_004525_010 Hb_007101_120 Hb_007101_120 Hb_004837_230--Hb_007101_120 Hb_000482_170 Hb_000482_170 Hb_004837_230--Hb_000482_170 Hb_005605_010--Hb_005245_110 Hb_005605_010--Hb_000083_020 Hb_005605_010--Hb_000482_170 Hb_006901_010 Hb_006901_010 Hb_005605_010--Hb_006901_010 Hb_003921_010 Hb_003921_010 Hb_005605_010--Hb_003921_010 Hb_005245_110--Hb_003921_010 Hb_005245_110--Hb_000083_020 Hb_005245_110--Hb_000482_170 Hb_001823_010 Hb_001823_010 Hb_005245_110--Hb_001823_010 Hb_000083_020--Hb_001823_010 Hb_000083_020--Hb_006901_010 Hb_000083_020--Hb_000482_170 Hb_002014_140 Hb_002014_140 Hb_000083_020--Hb_002014_140 Hb_000334_290 Hb_000334_290 Hb_004525_010--Hb_000334_290 Hb_002893_200 Hb_002893_200 Hb_004525_010--Hb_002893_200 Hb_000985_150 Hb_000985_150 Hb_004525_010--Hb_000985_150 Hb_107748_010 Hb_107748_010 Hb_004525_010--Hb_107748_010 Hb_004525_010--Hb_006901_010 Hb_020805_050 Hb_020805_050 Hb_007101_120--Hb_020805_050 Hb_000191_090 Hb_000191_090 Hb_007101_120--Hb_000191_090 Hb_007101_120--Hb_005245_110 Hb_008484_080 Hb_008484_080 Hb_007101_120--Hb_008484_080 Hb_005618_030 Hb_005618_030 Hb_007101_120--Hb_005618_030 Hb_000482_170--Hb_006901_010 Hb_000482_170--Hb_002014_140 Hb_000482_170--Hb_001823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.280206 2.51412 274.963 26.2825 0 0.111393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.857837 0.449624 0.337435 0.708156 413.712

CAGE analysis