Hb_004837_240

Information

Type -
Description -
Location Contig4837: 195479-197454
Sequence    

Annotation

kegg
ID rcu:RCOM_1577470
description 40S ribosomal protein S2, putative
nr
ID XP_012090022.1
description PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
swissprot
ID Q9SCM3
description 40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1
trembl
ID A0A067JQ34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25936 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s2-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44892: 195280-197458
cDNA
(Sanger)
(ID:Location)		 017_J08.ab1: 195804-197458 , 026_O14.ab1: 196889-197460 , 035_F17.ab1: 195785-197458 , 038_O05.ab1: 195776-197458 , 039_K06.ab1: 195778-197458 , 044_I09.ab1: 196806-197458 , 050_K24.ab1: 196872-197425

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_240 0.0 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
2 Hb_000684_380 0.0717565019 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
3 Hb_002320_040 0.0742123148 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
4 Hb_000589_120 0.0786049201 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
5 Hb_014109_040 0.0792232509 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
6 Hb_007576_080 0.0802820095 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
7 Hb_000317_240 0.0830648748 - - PREDICTED: protein DYAD [Jatropha curcas]
8 Hb_027472_040 0.0842548048 - - SKP1 [Hevea brasiliensis]
9 Hb_005365_030 0.085020526 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
10 Hb_002652_030 0.0859734856 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
11 Hb_024958_010 0.0861089839 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
12 Hb_000457_100 0.0862648595 - - prohibitin, putative [Ricinus communis]
13 Hb_001030_020 0.0863828576 - - Poly(A) polymerase alpha, putative [Ricinus communis]
14 Hb_000465_460 0.0873939326 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
15 Hb_003125_200 0.0885427491 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
16 Hb_003780_030 0.0892894113 - - PREDICTED: protein CMSS1 [Jatropha curcas]
17 Hb_000757_060 0.0907453188 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
18 Hb_002585_040 0.0913047206 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
19 Hb_005054_350 0.0926016434 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
20 Hb_004931_070 0.0928156495 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004837_240 Hb_004837_240 Hb_000684_380 Hb_000684_380 Hb_004837_240--Hb_000684_380 Hb_002320_040 Hb_002320_040 Hb_004837_240--Hb_002320_040 Hb_000589_120 Hb_000589_120 Hb_004837_240--Hb_000589_120 Hb_014109_040 Hb_014109_040 Hb_004837_240--Hb_014109_040 Hb_007576_080 Hb_007576_080 Hb_004837_240--Hb_007576_080 Hb_000317_240 Hb_000317_240 Hb_004837_240--Hb_000317_240 Hb_024958_010 Hb_024958_010 Hb_000684_380--Hb_024958_010 Hb_000684_380--Hb_000589_120 Hb_000768_090 Hb_000768_090 Hb_000684_380--Hb_000768_090 Hb_004058_030 Hb_004058_030 Hb_000684_380--Hb_004058_030 Hb_001359_050 Hb_001359_050 Hb_000684_380--Hb_001359_050 Hb_000331_550 Hb_000331_550 Hb_000684_380--Hb_000331_550 Hb_002320_040--Hb_024958_010 Hb_002320_040--Hb_000684_380 Hb_034552_030 Hb_034552_030 Hb_002320_040--Hb_034552_030 Hb_002936_010 Hb_002936_010 Hb_002320_040--Hb_002936_010 Hb_000062_070 Hb_000062_070 Hb_002320_040--Hb_000062_070 Hb_000589_120--Hb_014109_040 Hb_008554_060 Hb_008554_060 Hb_000589_120--Hb_008554_060 Hb_000589_120--Hb_007576_080 Hb_000417_130 Hb_000417_130 Hb_000589_120--Hb_000417_130 Hb_000905_110 Hb_000905_110 Hb_000589_120--Hb_000905_110 Hb_003125_120 Hb_003125_120 Hb_014109_040--Hb_003125_120 Hb_014109_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_014109_040--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_014109_040--Hb_003935_020 Hb_000334_280 Hb_000334_280 Hb_014109_040--Hb_000334_280 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_002585_040 Hb_002585_040 Hb_007576_080--Hb_002585_040 Hb_002530_030 Hb_002530_030 Hb_000317_240--Hb_002530_030 Hb_000757_060 Hb_000757_060 Hb_000317_240--Hb_000757_060 Hb_000317_240--Hb_000768_090 Hb_000465_460 Hb_000465_460 Hb_000317_240--Hb_000465_460 Hb_058999_020 Hb_058999_020 Hb_000317_240--Hb_058999_020 Hb_000504_140 Hb_000504_140 Hb_000317_240--Hb_000504_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
167.986 223.655 183.145 149.702 198.347 217.388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.911 365.665 166.038 258.514 96.1062

CAGE analysis