Hb_004841_010

Information

Type -
Description -
Location Contig4841: 3740-8194
Sequence    

Annotation

kegg
ID rcu:RCOM_1120050
description 50S ribosomal protein L2, putative
nr
ID XP_012075372.1
description PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
swissprot
ID P92812
description 60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2
trembl
ID A0A067KS69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10659 PE=4 SV=1
Gene Ontology
ID GO:0015934
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44911: 3819-8241 , PASA_asmbl_44912: 3833-8178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004841_010 0.0 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
2 Hb_165928_020 0.0575504909 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
3 Hb_023386_020 0.0599078099 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
4 Hb_008643_210 0.0608859331 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
5 Hb_016172_020 0.0651780245 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
6 Hb_000856_110 0.0674692684 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
7 Hb_004100_080 0.0680055813 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007632_030 0.0688302839 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
9 Hb_000331_260 0.068855292 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
10 Hb_000342_130 0.0694106041 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
11 Hb_000883_020 0.0727421407 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
12 Hb_000029_050 0.0727925339 - - expressed protein, putative [Ricinus communis]
13 Hb_000120_790 0.0731730802 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
14 Hb_000010_330 0.0741497785 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
15 Hb_003665_060 0.0746210858 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
16 Hb_007075_040 0.0749743205 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
17 Hb_000165_250 0.0757122926 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
18 Hb_002518_280 0.076309399 - - phosphate transporter [Manihot esculenta]
19 Hb_001675_180 0.0763666063 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
20 Hb_002235_250 0.0765986336 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004841_010 Hb_004841_010 Hb_165928_020 Hb_165928_020 Hb_004841_010--Hb_165928_020 Hb_023386_020 Hb_023386_020 Hb_004841_010--Hb_023386_020 Hb_008643_210 Hb_008643_210 Hb_004841_010--Hb_008643_210 Hb_016172_020 Hb_016172_020 Hb_004841_010--Hb_016172_020 Hb_000856_110 Hb_000856_110 Hb_004841_010--Hb_000856_110 Hb_004100_080 Hb_004100_080 Hb_004841_010--Hb_004100_080 Hb_000120_920 Hb_000120_920 Hb_165928_020--Hb_000120_920 Hb_165928_020--Hb_023386_020 Hb_165928_020--Hb_016172_020 Hb_004412_010 Hb_004412_010 Hb_165928_020--Hb_004412_010 Hb_000062_430 Hb_000062_430 Hb_165928_020--Hb_000062_430 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200 Hb_008643_210--Hb_016172_020 Hb_002045_240 Hb_002045_240 Hb_008643_210--Hb_002045_240 Hb_000060_090 Hb_000060_090 Hb_008643_210--Hb_000060_090 Hb_008643_210--Hb_023386_020 Hb_000010_330 Hb_000010_330 Hb_008643_210--Hb_000010_330 Hb_008406_200 Hb_008406_200 Hb_016172_020--Hb_008406_200 Hb_004143_060 Hb_004143_060 Hb_016172_020--Hb_004143_060 Hb_010618_010 Hb_010618_010 Hb_016172_020--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_016172_020--Hb_001409_020 Hb_001248_060 Hb_001248_060 Hb_016172_020--Hb_001248_060 Hb_000856_110--Hb_004100_080 Hb_000856_110--Hb_023386_020 Hb_000856_110--Hb_004412_010 Hb_006915_070 Hb_006915_070 Hb_000856_110--Hb_006915_070 Hb_000165_250 Hb_000165_250 Hb_000856_110--Hb_000165_250 Hb_000160_210 Hb_000160_210 Hb_004100_080--Hb_000160_210 Hb_007657_010 Hb_007657_010 Hb_004100_080--Hb_007657_010 Hb_004100_080--Hb_004412_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6985 11.5947 14.5376 13.0131 19.7093 27.1097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9066 22.5041 17.2385 11.0077 18.636

CAGE analysis