Hb_004846_040

Information

Type transcription factor
Description TF Family: HMG
Location Contig4846: 88258-92368
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44914: 90891-91280 , PASA_asmbl_44915: 92101-92368
cDNA
(Sanger)
(ID:Location)		 007_D17.ab1: 92101-92366 , 021_O11.ab1: 92101-92366

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_040 0.0 transcription factor TF Family: HMG -
2 Hb_000915_110 0.1186841808 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
3 Hb_000428_050 0.1242752954 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
4 Hb_163950_030 0.1247008751 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
5 Hb_001232_160 0.1253193446 - - PREDICTED: protein SYS1 homolog [Gossypium raimondii]
6 Hb_000679_130 0.1270895893 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_000567_360 0.1277525711 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
8 Hb_002529_060 0.130013325 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
9 Hb_000606_090 0.1324081892 - - Far upstream element-binding protein, putative [Ricinus communis]
10 Hb_007904_200 0.1336300111 - - protein binding protein, putative [Ricinus communis]
11 Hb_002506_020 0.1342306559 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
12 Hb_000012_430 0.1342784661 - - calcineurin B, putative [Ricinus communis]
13 Hb_000494_040 0.1346938946 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
14 Hb_000367_130 0.1353916212 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000042_270 0.135434483 - - myosin vIII, putative [Ricinus communis]
16 Hb_000606_080 0.1355507453 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
17 Hb_000025_050 0.1367910105 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
18 Hb_002232_100 0.1373651034 - - vacuolar ATPase F subunit [Hevea brasiliensis]
19 Hb_005432_010 0.1376168963 - - -
20 Hb_106411_010 0.1387815765 - - Ribosomal protein S25 family protein [Theobroma cacao]

Gene co-expression network

sample Hb_004846_040 Hb_004846_040 Hb_000915_110 Hb_000915_110 Hb_004846_040--Hb_000915_110 Hb_000428_050 Hb_000428_050 Hb_004846_040--Hb_000428_050 Hb_163950_030 Hb_163950_030 Hb_004846_040--Hb_163950_030 Hb_001232_160 Hb_001232_160 Hb_004846_040--Hb_001232_160 Hb_000679_130 Hb_000679_130 Hb_004846_040--Hb_000679_130 Hb_000567_360 Hb_000567_360 Hb_004846_040--Hb_000567_360 Hb_000606_090 Hb_000606_090 Hb_000915_110--Hb_000606_090 Hb_000705_120 Hb_000705_120 Hb_000915_110--Hb_000705_120 Hb_000915_110--Hb_000567_360 Hb_030131_040 Hb_030131_040 Hb_000915_110--Hb_030131_040 Hb_001444_010 Hb_001444_010 Hb_000915_110--Hb_001444_010 Hb_001341_120 Hb_001341_120 Hb_000915_110--Hb_001341_120 Hb_001776_140 Hb_001776_140 Hb_000428_050--Hb_001776_140 Hb_012022_160 Hb_012022_160 Hb_000428_050--Hb_012022_160 Hb_000010_330 Hb_000010_330 Hb_000428_050--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_000428_050--Hb_007904_200 Hb_003195_070 Hb_003195_070 Hb_000428_050--Hb_003195_070 Hb_001675_180 Hb_001675_180 Hb_000428_050--Hb_001675_180 Hb_004837_030 Hb_004837_030 Hb_163950_030--Hb_004837_030 Hb_009694_010 Hb_009694_010 Hb_163950_030--Hb_009694_010 Hb_004841_010 Hb_004841_010 Hb_163950_030--Hb_004841_010 Hb_000494_040 Hb_000494_040 Hb_163950_030--Hb_000494_040 Hb_002184_150 Hb_002184_150 Hb_163950_030--Hb_002184_150 Hb_163950_030--Hb_000606_090 Hb_000365_390 Hb_000365_390 Hb_001232_160--Hb_000365_390 Hb_001232_160--Hb_000428_050 Hb_001232_160--Hb_007904_200 Hb_001232_160--Hb_003195_070 Hb_004447_060 Hb_004447_060 Hb_001232_160--Hb_004447_060 Hb_010457_030 Hb_010457_030 Hb_001232_160--Hb_010457_030 Hb_000025_110 Hb_000025_110 Hb_000679_130--Hb_000025_110 Hb_000679_130--Hb_001444_010 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_003044_100 Hb_003044_100 Hb_000567_360--Hb_003044_100 Hb_000364_060 Hb_000364_060 Hb_000567_360--Hb_000364_060 Hb_006064_010 Hb_006064_010 Hb_000567_360--Hb_006064_010 Hb_004195_280 Hb_004195_280 Hb_000567_360--Hb_004195_280 Hb_002587_020 Hb_002587_020 Hb_000567_360--Hb_002587_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.15783 2.05758 4.87215 5.42699 7.35266 12.1459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06162 6.16916 4.82683 1.05415 3.74067

CAGE analysis