Hb_004846_050

Information

Type -
Description -
Location Contig4846: 92599-94900
Sequence    

Annotation

kegg
ID rcu:RCOM_0633320
description hypothetical protein
nr
ID XP_012072085.1
description PREDICTED: uncharacterized protein ycf23-like [Jatropha curcas]
swissprot
ID Q1XDB4
description Uncharacterized protein ycf23 OS=Pyropia yezoensis GN=ycf23 PE=3 SV=1
trembl
ID A0A067KNZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04594 PE=4 SV=1
Gene Ontology
ID GO:0003824
description thiamine monophosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44916: 92578-94835
cDNA
(Sanger)
(ID:Location)		 010_N24.ab1: 94254-94814

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_050 0.0 - - PREDICTED: uncharacterized protein ycf23-like [Jatropha curcas]
2 Hb_005038_030 0.1286413702 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
3 Hb_000802_050 0.1401831356 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
4 Hb_001907_070 0.1431659546 - - 50S ribosomal protein L1p, putative [Ricinus communis]
5 Hb_001300_130 0.1538994648 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
6 Hb_001723_030 0.1543058852 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
7 Hb_002027_410 0.1590371736 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
8 Hb_001352_080 0.1619757613 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
9 Hb_003549_140 0.162102669 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_002217_140 0.1649531569 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
11 Hb_000976_190 0.1698220303 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
12 Hb_011310_140 0.1703854163 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
13 Hb_024399_020 0.1751399798 - - electron transporter, putative [Ricinus communis]
14 Hb_000061_150 0.1758054778 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
15 Hb_000684_430 0.1779754961 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
16 Hb_005618_150 0.1787927841 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
17 Hb_006062_030 0.1803716856 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
18 Hb_000023_370 0.1818673715 - - -
19 Hb_005016_140 0.1821993056 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_006829_080 0.1822372144 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]

Gene co-expression network

sample Hb_004846_050 Hb_004846_050 Hb_005038_030 Hb_005038_030 Hb_004846_050--Hb_005038_030 Hb_000802_050 Hb_000802_050 Hb_004846_050--Hb_000802_050 Hb_001907_070 Hb_001907_070 Hb_004846_050--Hb_001907_070 Hb_001300_130 Hb_001300_130 Hb_004846_050--Hb_001300_130 Hb_001723_030 Hb_001723_030 Hb_004846_050--Hb_001723_030 Hb_002027_410 Hb_002027_410 Hb_004846_050--Hb_002027_410 Hb_001352_080 Hb_001352_080 Hb_005038_030--Hb_001352_080 Hb_005038_030--Hb_001907_070 Hb_005618_150 Hb_005618_150 Hb_005038_030--Hb_005618_150 Hb_006911_070 Hb_006911_070 Hb_005038_030--Hb_006911_070 Hb_002016_010 Hb_002016_010 Hb_005038_030--Hb_002016_010 Hb_000802_050--Hb_001300_130 Hb_006829_080 Hb_006829_080 Hb_000802_050--Hb_006829_080 Hb_003549_140 Hb_003549_140 Hb_000802_050--Hb_003549_140 Hb_002232_380 Hb_002232_380 Hb_000802_050--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_000802_050--Hb_000005_130 Hb_000684_430 Hb_000684_430 Hb_000802_050--Hb_000684_430 Hb_001907_070--Hb_005618_150 Hb_001907_070--Hb_006911_070 Hb_000023_370 Hb_000023_370 Hb_001907_070--Hb_000023_370 Hb_004871_010 Hb_004871_010 Hb_001907_070--Hb_004871_010 Hb_001907_070--Hb_001723_030 Hb_027298_020 Hb_027298_020 Hb_001300_130--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_001300_130--Hb_000703_070 Hb_001300_130--Hb_003549_140 Hb_001300_130--Hb_000684_430 Hb_005563_040 Hb_005563_040 Hb_001300_130--Hb_005563_040 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_001723_030--Hb_002027_410 Hb_001723_030--Hb_000684_430 Hb_002027_410--Hb_016461_030 Hb_006637_080 Hb_006637_080 Hb_002027_410--Hb_006637_080 Hb_003777_020 Hb_003777_020 Hb_002027_410--Hb_003777_020 Hb_002027_410--Hb_000803_240 Hb_000144_060 Hb_000144_060 Hb_002027_410--Hb_000144_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.89561 0.628361 34.2571 8.39607 9.99617 11.7045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.94101 4.59188 5.38826 2.13895 52.8926

CAGE analysis