Hb_004846_090

Information

Type transcription factor
Description TF Family: HMG
Location Contig4846: 145814-149756
Sequence    

Annotation

kegg
ID tcc:TCM_029514
description HMG-box DNA-binding family protein isoform 1
nr
ID XP_007025116.1
description HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
swissprot
ID O64702
description High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14 PE=2 SV=2
trembl
ID A0A061GEA9
description HMG-box DNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_029514 PE=4 SV=1
Gene Ontology
ID GO:0005634
description high mobility group b protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44920: 147956-148578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_090 0.0 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
2 Hb_000453_090 0.0727004437 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
3 Hb_011671_390 0.0753685097 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
4 Hb_004459_040 0.081116576 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
5 Hb_001780_040 0.0893858959 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
6 Hb_000840_180 0.0898659442 - - protein BOLA2 [Jatropha curcas]
7 Hb_028486_030 0.0904860104 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
8 Hb_002843_140 0.0935485405 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
9 Hb_001300_040 0.0958012183 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
10 Hb_003050_280 0.0969088994 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
11 Hb_018133_020 0.0994864778 - - transporter, putative [Ricinus communis]
12 Hb_003683_110 0.0996843773 - - JHL10I11.3 [Jatropha curcas]
13 Hb_000996_140 0.0997016858 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
14 Hb_000680_140 0.0998043574 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
15 Hb_002768_030 0.0998062523 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
16 Hb_007576_170 0.1024482131 - - conserved hypothetical protein [Ricinus communis]
17 Hb_026053_020 0.1048114919 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
18 Hb_004057_010 0.1054322239 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
19 Hb_000320_180 0.1059824244 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
20 Hb_153112_030 0.1063929651 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]

Gene co-expression network

sample Hb_004846_090 Hb_004846_090 Hb_000453_090 Hb_000453_090 Hb_004846_090--Hb_000453_090 Hb_011671_390 Hb_011671_390 Hb_004846_090--Hb_011671_390 Hb_004459_040 Hb_004459_040 Hb_004846_090--Hb_004459_040 Hb_001780_040 Hb_001780_040 Hb_004846_090--Hb_001780_040 Hb_000840_180 Hb_000840_180 Hb_004846_090--Hb_000840_180 Hb_028486_030 Hb_028486_030 Hb_004846_090--Hb_028486_030 Hb_003683_110 Hb_003683_110 Hb_000453_090--Hb_003683_110 Hb_001300_040 Hb_001300_040 Hb_000453_090--Hb_001300_040 Hb_006925_040 Hb_006925_040 Hb_000453_090--Hb_006925_040 Hb_010672_060 Hb_010672_060 Hb_000453_090--Hb_010672_060 Hb_000453_090--Hb_001780_040 Hb_028487_030 Hb_028487_030 Hb_011671_390--Hb_028487_030 Hb_001616_030 Hb_001616_030 Hb_011671_390--Hb_001616_030 Hb_011671_390--Hb_028486_030 Hb_002999_050 Hb_002999_050 Hb_011671_390--Hb_002999_050 Hb_000069_700 Hb_000069_700 Hb_011671_390--Hb_000069_700 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_002768_030 Hb_002768_030 Hb_001780_040--Hb_002768_030 Hb_001780_040--Hb_003683_110 Hb_002235_350 Hb_002235_350 Hb_001780_040--Hb_002235_350 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_000127_180 Hb_000127_180 Hb_001780_040--Hb_000127_180 Hb_003226_100 Hb_003226_100 Hb_001780_040--Hb_003226_100 Hb_000169_040 Hb_000169_040 Hb_000840_180--Hb_000169_040 Hb_004127_020 Hb_004127_020 Hb_000840_180--Hb_004127_020 Hb_002798_020 Hb_002798_020 Hb_000840_180--Hb_002798_020 Hb_000840_180--Hb_004459_040 Hb_026053_020 Hb_026053_020 Hb_000840_180--Hb_026053_020 Hb_000996_140 Hb_000996_140 Hb_000840_180--Hb_000996_140 Hb_028486_030--Hb_000680_140 Hb_000962_040 Hb_000962_040 Hb_028486_030--Hb_000962_040 Hb_007220_010 Hb_007220_010 Hb_028486_030--Hb_007220_010 Hb_026549_040 Hb_026549_040 Hb_028486_030--Hb_026549_040 Hb_012675_050 Hb_012675_050 Hb_028486_030--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3895 10.9285 33.8111 19.2784 20.4062 20.6142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.8089 106.025 44.5437 13.3923 33.3567

CAGE analysis