Hb_004846_150

Information

Type -
Description -
Location Contig4846: 224126-227572
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18230g
description POPTRDRAFT_554901; hypothetical protein
nr
ID KDP41950.1
description hypothetical protein JCGZ_26968 [Jatropha curcas]
swissprot
ID Q9ZUI0
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1
trembl
ID A0A067LBT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26968 PE=4 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like serine threonine-protein kinase at2g24130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44922: 224828-225092 , PASA_asmbl_44923: 225271-225994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_150 0.0 - - hypothetical protein JCGZ_26968 [Jatropha curcas]
2 Hb_000207_290 0.1946808709 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
3 Hb_000700_080 0.2038063616 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002876_250 0.2064064074 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
5 Hb_001242_190 0.2075612912 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
6 Hb_001486_200 0.208809072 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
7 Hb_025708_020 0.2092499759 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_008226_030 0.2100598795 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
9 Hb_000340_290 0.2143678047 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
10 Hb_001474_050 0.2179201863 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
11 Hb_143766_030 0.2194680918 - - protein with unknown function [Ricinus communis]
12 Hb_000062_640 0.2214510438 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
13 Hb_000116_210 0.2243047107 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
14 Hb_005162_140 0.2249667363 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
15 Hb_026698_030 0.2256811811 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
16 Hb_032718_010 0.2263016564 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_000120_160 0.2278966963 - - unnamed protein product [Vitis vinifera]
18 Hb_003605_220 0.2309976021 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
19 Hb_023344_060 0.2321817621 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
20 Hb_000836_600 0.2346031434 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004846_150 Hb_004846_150 Hb_000207_290 Hb_000207_290 Hb_004846_150--Hb_000207_290 Hb_000700_080 Hb_000700_080 Hb_004846_150--Hb_000700_080 Hb_002876_250 Hb_002876_250 Hb_004846_150--Hb_002876_250 Hb_001242_190 Hb_001242_190 Hb_004846_150--Hb_001242_190 Hb_001486_200 Hb_001486_200 Hb_004846_150--Hb_001486_200 Hb_025708_020 Hb_025708_020 Hb_004846_150--Hb_025708_020 Hb_000805_190 Hb_000805_190 Hb_000207_290--Hb_000805_190 Hb_000207_290--Hb_002876_250 Hb_000056_280 Hb_000056_280 Hb_000207_290--Hb_000056_280 Hb_000116_210 Hb_000116_210 Hb_000207_290--Hb_000116_210 Hb_001049_160 Hb_001049_160 Hb_000207_290--Hb_001049_160 Hb_000207_290--Hb_001486_200 Hb_005489_070 Hb_005489_070 Hb_000700_080--Hb_005489_070 Hb_000656_310 Hb_000656_310 Hb_000700_080--Hb_000656_310 Hb_009615_120 Hb_009615_120 Hb_000700_080--Hb_009615_120 Hb_001117_130 Hb_001117_130 Hb_000700_080--Hb_001117_130 Hb_001616_110 Hb_001616_110 Hb_000700_080--Hb_001616_110 Hb_002343_010 Hb_002343_010 Hb_000700_080--Hb_002343_010 Hb_002876_250--Hb_000116_210 Hb_000120_160 Hb_000120_160 Hb_002876_250--Hb_000120_160 Hb_000805_230 Hb_000805_230 Hb_002876_250--Hb_000805_230 Hb_000836_600 Hb_000836_600 Hb_002876_250--Hb_000836_600 Hb_002876_250--Hb_000805_190 Hb_001619_160 Hb_001619_160 Hb_001242_190--Hb_001619_160 Hb_065525_010 Hb_065525_010 Hb_001242_190--Hb_065525_010 Hb_006052_060 Hb_006052_060 Hb_001242_190--Hb_006052_060 Hb_001318_140 Hb_001318_140 Hb_001242_190--Hb_001318_140 Hb_001242_190--Hb_000207_290 Hb_001242_190--Hb_001049_160 Hb_000059_300 Hb_000059_300 Hb_001486_200--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_001486_200--Hb_000110_300 Hb_001486_200--Hb_001049_160 Hb_001486_200--Hb_002876_250 Hb_014720_050 Hb_014720_050 Hb_001486_200--Hb_014720_050 Hb_128589_010 Hb_128589_010 Hb_001486_200--Hb_128589_010 Hb_025708_010 Hb_025708_010 Hb_025708_020--Hb_025708_010 Hb_000226_080 Hb_000226_080 Hb_025708_020--Hb_000226_080 Hb_012340_060 Hb_012340_060 Hb_025708_020--Hb_012340_060 Hb_168319_010 Hb_168319_010 Hb_025708_020--Hb_168319_010 Hb_023344_060 Hb_023344_060 Hb_025708_020--Hb_023344_060 Hb_000656_390 Hb_000656_390 Hb_025708_020--Hb_000656_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0385746 0.399248 0.0879164 0.198697 0.0244845 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0291581 0.0229452 0.219444 0.104661 0.220282

CAGE analysis