Hb_004852_020

Information

Type -
Description -
Location Contig4852: 56513-58855
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004852_020 0.0 - - -
2 Hb_000175_520 0.0749121 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_007317_220 0.0822817324 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
4 Hb_002942_030 0.090169769 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
5 Hb_023675_010 0.0983327611 - - -
6 Hb_002518_250 0.1070806525 - - conserved hypothetical protein 10 [Hevea brasiliensis]
7 Hb_001248_020 0.1172358429 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
8 Hb_000933_140 0.1184774938 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
9 Hb_012395_100 0.1221902636 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
10 Hb_002374_340 0.1224150896 - - Two-component response regulator ARR9, putative [Ricinus communis]
11 Hb_001504_170 0.1237665603 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
12 Hb_017895_050 0.126170828 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
13 Hb_003453_010 0.1269786072 - - conserved hypothetical protein [Ricinus communis]
14 Hb_013479_020 0.1281940541 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
15 Hb_005245_090 0.1295314613 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
16 Hb_036369_010 0.1316621478 - - -
17 Hb_017134_040 0.1370060288 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
18 Hb_178345_010 0.1385326103 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
19 Hb_008016_010 0.1402153668 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
20 Hb_000193_230 0.1413512785 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004852_020 Hb_004852_020 Hb_000175_520 Hb_000175_520 Hb_004852_020--Hb_000175_520 Hb_007317_220 Hb_007317_220 Hb_004852_020--Hb_007317_220 Hb_002942_030 Hb_002942_030 Hb_004852_020--Hb_002942_030 Hb_023675_010 Hb_023675_010 Hb_004852_020--Hb_023675_010 Hb_002518_250 Hb_002518_250 Hb_004852_020--Hb_002518_250 Hb_001248_020 Hb_001248_020 Hb_004852_020--Hb_001248_020 Hb_000175_520--Hb_002518_250 Hb_000175_520--Hb_002942_030 Hb_012395_100 Hb_012395_100 Hb_000175_520--Hb_012395_100 Hb_000933_140 Hb_000933_140 Hb_000175_520--Hb_000933_140 Hb_000175_520--Hb_007317_220 Hb_002374_340 Hb_002374_340 Hb_007317_220--Hb_002374_340 Hb_017134_040 Hb_017134_040 Hb_007317_220--Hb_017134_040 Hb_007317_220--Hb_000933_140 Hb_008016_010 Hb_008016_010 Hb_007317_220--Hb_008016_010 Hb_007317_220--Hb_023675_010 Hb_001504_170 Hb_001504_170 Hb_002942_030--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_002942_030--Hb_013479_020 Hb_026048_090 Hb_026048_090 Hb_002942_030--Hb_026048_090 Hb_001433_170 Hb_001433_170 Hb_002942_030--Hb_001433_170 Hb_000366_100 Hb_000366_100 Hb_023675_010--Hb_000366_100 Hb_036369_010 Hb_036369_010 Hb_023675_010--Hb_036369_010 Hb_077562_040 Hb_077562_040 Hb_023675_010--Hb_077562_040 Hb_023675_010--Hb_001248_020 Hb_023675_010--Hb_012395_100 Hb_003453_010 Hb_003453_010 Hb_002518_250--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_002518_250--Hb_001437_040 Hb_002518_250--Hb_000933_140 Hb_017895_050 Hb_017895_050 Hb_002518_250--Hb_017895_050 Hb_001248_020--Hb_036369_010 Hb_003398_060 Hb_003398_060 Hb_001248_020--Hb_003398_060 Hb_025246_010 Hb_025246_010 Hb_001248_020--Hb_025246_010 Hb_001248_020--Hb_012395_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.60668 0.284405 0.255697 0.108924 9.66015 11.6728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5761 6.78113 3.55943 1.29296 0.470598

CAGE analysis