Hb_004852_030

Information

Type -
Description -
Location Contig4852: 92709-96073
Sequence    

Annotation

kegg
ID tcc:TCM_017340
description hypothetical protein
nr
ID XP_012079513.1
description PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12614 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44970: 92772-95935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004852_030 0.0 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
2 Hb_000803_150 0.0798763054 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
3 Hb_002007_270 0.0826720272 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
4 Hb_185467_020 0.087929887 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_066807_010 0.0911918311 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
6 Hb_000165_030 0.0954683396 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
7 Hb_001981_070 0.0977774299 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
8 Hb_000749_150 0.0992370709 - - -
9 Hb_001214_130 0.1002514075 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
10 Hb_000156_140 0.1014483312 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
11 Hb_004993_010 0.1040310581 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
12 Hb_041091_010 0.1045890928 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
13 Hb_003120_060 0.107184733 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
14 Hb_002997_170 0.1081264442 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
15 Hb_026048_100 0.1081766937 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
16 Hb_010608_010 0.1081830819 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
17 Hb_008453_150 0.1095615211 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
18 Hb_002631_050 0.1097406886 - - membrane associated ring finger 1,8, putative [Ricinus communis]
19 Hb_182026_010 0.1109288707 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
20 Hb_000057_040 0.111007394 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_004852_030 Hb_004852_030 Hb_000803_150 Hb_000803_150 Hb_004852_030--Hb_000803_150 Hb_002007_270 Hb_002007_270 Hb_004852_030--Hb_002007_270 Hb_185467_020 Hb_185467_020 Hb_004852_030--Hb_185467_020 Hb_066807_010 Hb_066807_010 Hb_004852_030--Hb_066807_010 Hb_000165_030 Hb_000165_030 Hb_004852_030--Hb_000165_030 Hb_001981_070 Hb_001981_070 Hb_004852_030--Hb_001981_070 Hb_001214_130 Hb_001214_130 Hb_000803_150--Hb_001214_130 Hb_000162_090 Hb_000162_090 Hb_000803_150--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_041091_010 Hb_041091_010 Hb_000803_150--Hb_041091_010 Hb_003642_060 Hb_003642_060 Hb_000803_150--Hb_003642_060 Hb_000803_150--Hb_185467_020 Hb_001538_010 Hb_001538_010 Hb_002007_270--Hb_001538_010 Hb_026048_100 Hb_026048_100 Hb_002007_270--Hb_026048_100 Hb_000622_310 Hb_000622_310 Hb_002007_270--Hb_000622_310 Hb_003297_030 Hb_003297_030 Hb_002007_270--Hb_003297_030 Hb_000172_400 Hb_000172_400 Hb_002007_270--Hb_000172_400 Hb_008453_150 Hb_008453_150 Hb_185467_020--Hb_008453_150 Hb_002631_050 Hb_002631_050 Hb_185467_020--Hb_002631_050 Hb_002874_070 Hb_002874_070 Hb_185467_020--Hb_002874_070 Hb_001936_050 Hb_001936_050 Hb_185467_020--Hb_001936_050 Hb_185467_020--Hb_001981_070 Hb_066807_010--Hb_026048_100 Hb_002681_140 Hb_002681_140 Hb_066807_010--Hb_002681_140 Hb_032531_030 Hb_032531_030 Hb_066807_010--Hb_032531_030 Hb_000365_360 Hb_000365_360 Hb_066807_010--Hb_000365_360 Hb_001902_050 Hb_001902_050 Hb_066807_010--Hb_001902_050 Hb_000165_030--Hb_000162_090 Hb_000165_030--Hb_000749_150 Hb_002997_170 Hb_002997_170 Hb_000165_030--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000165_030--Hb_000905_190 Hb_000156_140 Hb_000156_140 Hb_000165_030--Hb_000156_140 Hb_109842_010 Hb_109842_010 Hb_000165_030--Hb_109842_010 Hb_001981_070--Hb_008453_150 Hb_000084_310 Hb_000084_310 Hb_001981_070--Hb_000084_310 Hb_001981_070--Hb_000165_030 Hb_001981_070--Hb_002631_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0991 8.63387 8.84533 6.34639 41.1502 58.1082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3615 28.1369 29.4906 7.13688 5.14158

CAGE analysis