Hb_004855_080

Information

Type -
Description -
Location Contig4855: 95532-99971
Sequence    

Annotation

kegg
ID cmo:103486311
description auxin transporter-like protein 2
nr
ID KDP24475.1
description hypothetical protein JCGZ_25039 [Jatropha curcas]
swissprot
ID Q9FEL7
description Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1
trembl
ID A0A067JWT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25039 PE=4 SV=1
Gene Ontology
ID GO:0005768
description auxin transporter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44978: 95522-99931 , PASA_asmbl_44979: 95637-99908 , PASA_asmbl_44980: 96004-96668 , PASA_asmbl_44981: 98789-99094
cDNA
(Sanger)
(ID:Location)		 046_D21.ab1: 99096-99604

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004855_080 0.0 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
2 Hb_000008_150 0.0500505193 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
3 Hb_001488_420 0.0547215162 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
4 Hb_001405_040 0.0712460449 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
5 Hb_000759_040 0.073174086 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
6 Hb_003506_010 0.0755428537 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
7 Hb_004602_010 0.0876126909 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
8 Hb_002890_200 0.0890127052 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
9 Hb_002822_010 0.0894567806 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
10 Hb_002078_320 0.089732882 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
11 Hb_000703_120 0.0904886932 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
12 Hb_009788_020 0.0911292044 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
13 Hb_004116_050 0.0936154491 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
14 Hb_000023_130 0.0946838725 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
15 Hb_000901_010 0.0961591273 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
16 Hb_000260_750 0.1018102965 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
17 Hb_020805_070 0.1025642132 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
18 Hb_005892_040 0.1031697394 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
19 Hb_004946_010 0.1043876847 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
20 Hb_004162_320 0.1046160058 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004855_080 Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_004855_080--Hb_000008_150 Hb_001488_420 Hb_001488_420 Hb_004855_080--Hb_001488_420 Hb_001405_040 Hb_001405_040 Hb_004855_080--Hb_001405_040 Hb_000759_040 Hb_000759_040 Hb_004855_080--Hb_000759_040 Hb_003506_010 Hb_003506_010 Hb_004855_080--Hb_003506_010 Hb_004602_010 Hb_004602_010 Hb_004855_080--Hb_004602_010 Hb_000008_150--Hb_001488_420 Hb_000008_150--Hb_001405_040 Hb_000008_150--Hb_004602_010 Hb_000008_150--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_000008_150--Hb_005892_040 Hb_001488_420--Hb_000759_040 Hb_004218_140 Hb_004218_140 Hb_001488_420--Hb_004218_140 Hb_001488_420--Hb_003506_010 Hb_001488_420--Hb_004602_010 Hb_020805_070 Hb_020805_070 Hb_001405_040--Hb_020805_070 Hb_004116_050 Hb_004116_050 Hb_001405_040--Hb_004116_050 Hb_001405_040--Hb_003506_010 Hb_001405_040--Hb_005892_040 Hb_005892_050 Hb_005892_050 Hb_000759_040--Hb_005892_050 Hb_000759_040--Hb_004602_010 Hb_000023_130 Hb_000023_130 Hb_000759_040--Hb_000023_130 Hb_006618_110 Hb_006618_110 Hb_000759_040--Hb_006618_110 Hb_004162_320 Hb_004162_320 Hb_003506_010--Hb_004162_320 Hb_003506_010--Hb_005892_040 Hb_002078_320 Hb_002078_320 Hb_003506_010--Hb_002078_320 Hb_003506_010--Hb_020805_070 Hb_000162_200 Hb_000162_200 Hb_003506_010--Hb_000162_200 Hb_004602_010--Hb_004218_140 Hb_004602_010--Hb_005892_050 Hb_008304_010 Hb_008304_010 Hb_004602_010--Hb_008304_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0608594 6.7719 41.3078 25.2983 0.0444692 0.0349366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.0986 35.3932

CAGE analysis