Hb_004871_020

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig4871: 19251-21331
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06780g
description POPTRDRAFT_730132; SWIB complex BAF60b domain-containing family protein
nr
ID XP_012070321.1
description PREDICTED: protein TRI1 [Jatropha curcas]
swissprot
ID Q05024
description Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1
trembl
ID A0A067L690
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02629 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45056: 19283-21395 , PASA_asmbl_45057: 20647-20765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004871_020 0.0 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
2 Hb_000317_070 0.0538875841 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
3 Hb_153544_010 0.0691499893 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
4 Hb_007441_300 0.0823101566 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000525_020 0.0843075055 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_009711_020 0.0858009964 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
7 Hb_000030_290 0.0876603251 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
8 Hb_000111_340 0.0911233014 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
9 Hb_001616_040 0.0914372872 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
10 Hb_004102_070 0.0940909761 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
11 Hb_000684_270 0.0953310438 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
12 Hb_000451_060 0.0964651507 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
13 Hb_010815_030 0.0970398466 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
14 Hb_174865_010 0.0972490273 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
15 Hb_003226_100 0.097376679 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
16 Hb_000506_070 0.0990898689 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
17 Hb_010175_040 0.1009065195 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
18 Hb_007416_020 0.1009103641 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
19 Hb_077354_010 0.1025454543 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
20 Hb_029904_030 0.1032057811 - - aspartate aminotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004871_020 Hb_004871_020 Hb_000317_070 Hb_000317_070 Hb_004871_020--Hb_000317_070 Hb_153544_010 Hb_153544_010 Hb_004871_020--Hb_153544_010 Hb_007441_300 Hb_007441_300 Hb_004871_020--Hb_007441_300 Hb_000525_020 Hb_000525_020 Hb_004871_020--Hb_000525_020 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_004871_020--Hb_000030_290 Hb_000317_070--Hb_007441_300 Hb_174865_010 Hb_174865_010 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_000317_070--Hb_153544_010 Hb_153544_010--Hb_000030_290 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010 Hb_007441_300--Hb_174865_010 Hb_003018_020 Hb_003018_020 Hb_007441_300--Hb_003018_020 Hb_004459_040 Hb_004459_040 Hb_007441_300--Hb_004459_040 Hb_000948_220 Hb_000948_220 Hb_007441_300--Hb_000948_220 Hb_000331_470 Hb_000331_470 Hb_000525_020--Hb_000331_470 Hb_000525_020--Hb_091433_020 Hb_001863_430 Hb_001863_430 Hb_000525_020--Hb_001863_430 Hb_000684_270 Hb_000684_270 Hb_000525_020--Hb_000684_270 Hb_003787_010 Hb_003787_010 Hb_000525_020--Hb_003787_010 Hb_009711_020--Hb_000030_290 Hb_002609_210 Hb_002609_210 Hb_009711_020--Hb_002609_210 Hb_001616_040 Hb_001616_040 Hb_009711_020--Hb_001616_040 Hb_000334_210 Hb_000334_210 Hb_009711_020--Hb_000334_210 Hb_002477_140 Hb_002477_140 Hb_009711_020--Hb_002477_140 Hb_000030_290--Hb_001616_040 Hb_000030_290--Hb_000334_210 Hb_000030_290--Hb_000331_470 Hb_000030_290--Hb_002609_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.6936 24.7256 33.3279 37.2901 20.9222 27.4174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.349 130.748 36.6794 35.7078 23.7797

CAGE analysis