Hb_004871_050

Information

Type -
Description -
Location Contig4871: 37078-40496
Sequence    

Annotation

kegg
ID egr:104441279
description glycine-rich protein A3-like
nr
ID KHG00985.1
description hypothetical protein F383_22684 [Gossypium arboreum]
swissprot
ID A1VG83
description Translation initiation factor IF-2 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=infB PE=3 SV=1
trembl
ID A0A0B0MJM4
description Uncharacterized protein OS=Gossypium arboreum GN=F383_22684 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45062: 37078-40534
cDNA
(Sanger)
(ID:Location)		 002_K24.ab1: 39894-40201 , 021_A10.ab1: 37078-40055 , 024_I17.ab1: 37087-40076

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004871_050 0.0 - - hypothetical protein F383_22684 [Gossypium arboreum]
2 Hb_000972_010 0.1062953273 - - PREDICTED: kinesin KP1 [Jatropha curcas]
3 Hb_000120_650 0.1435734557 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
4 Hb_000249_130 0.1469089116 - - hypothetical protein RCOM_0254640 [Ricinus communis]
5 Hb_017124_020 0.149570588 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
6 Hb_000120_120 0.1516804477 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
7 Hb_001268_400 0.1551518813 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
8 Hb_013818_060 0.1555121829 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
9 Hb_004429_070 0.1695093297 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
10 Hb_000567_250 0.1706890554 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
11 Hb_000193_240 0.1784073536 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
12 Hb_002290_040 0.1787409312 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027892_010 0.1844244548 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
14 Hb_002739_110 0.18535925 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
15 Hb_001035_070 0.1883274265 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
16 Hb_001153_220 0.1894448148 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
17 Hb_000249_090 0.1926828555 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
18 Hb_024952_010 0.1927871754 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
19 Hb_001396_230 0.196957955 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
20 Hb_143629_090 0.1988043279 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]

Gene co-expression network

sample Hb_004871_050 Hb_004871_050 Hb_000972_010 Hb_000972_010 Hb_004871_050--Hb_000972_010 Hb_000120_650 Hb_000120_650 Hb_004871_050--Hb_000120_650 Hb_000249_130 Hb_000249_130 Hb_004871_050--Hb_000249_130 Hb_017124_020 Hb_017124_020 Hb_004871_050--Hb_017124_020 Hb_000120_120 Hb_000120_120 Hb_004871_050--Hb_000120_120 Hb_001268_400 Hb_001268_400 Hb_004871_050--Hb_001268_400 Hb_000972_010--Hb_017124_020 Hb_000103_110 Hb_000103_110 Hb_000972_010--Hb_000103_110 Hb_000972_010--Hb_000120_650 Hb_000972_010--Hb_000120_120 Hb_000157_040 Hb_000157_040 Hb_000972_010--Hb_000157_040 Hb_000249_090 Hb_000249_090 Hb_000120_650--Hb_000249_090 Hb_027892_010 Hb_027892_010 Hb_000120_650--Hb_027892_010 Hb_000120_650--Hb_017124_020 Hb_002685_090 Hb_002685_090 Hb_000120_650--Hb_002685_090 Hb_013818_060 Hb_013818_060 Hb_000120_650--Hb_013818_060 Hb_143629_090 Hb_143629_090 Hb_000249_130--Hb_143629_090 Hb_003030_080 Hb_003030_080 Hb_000249_130--Hb_003030_080 Hb_003497_030 Hb_003497_030 Hb_000249_130--Hb_003497_030 Hb_024952_010 Hb_024952_010 Hb_000249_130--Hb_024952_010 Hb_001606_070 Hb_001606_070 Hb_000249_130--Hb_001606_070 Hb_000380_180 Hb_000380_180 Hb_000249_130--Hb_000380_180 Hb_000567_250 Hb_000567_250 Hb_017124_020--Hb_000567_250 Hb_017124_020--Hb_027892_010 Hb_017124_020--Hb_000249_090 Hb_000120_120--Hb_013818_060 Hb_000120_120--Hb_027892_010 Hb_000120_120--Hb_000249_130 Hb_000120_120--Hb_000120_650 Hb_000120_120--Hb_000249_090 Hb_000193_240 Hb_000193_240 Hb_001268_400--Hb_000193_240 Hb_000749_250 Hb_000749_250 Hb_001268_400--Hb_000749_250 Hb_010417_020 Hb_010417_020 Hb_001268_400--Hb_010417_020 Hb_001232_130 Hb_001232_130 Hb_001268_400--Hb_001232_130 Hb_152439_020 Hb_152439_020 Hb_001268_400--Hb_152439_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.803 2.01865 1.54364 15.8785 68.4131 162.736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
184.22 195.306 780.256 53.0258 9.39284

CAGE analysis