Hb_004871_080

Information

Type -
Description -
Location Contig4871: 60499-64852
Sequence    

Annotation

kegg
ID rcu:RCOM_1515760
description tubulin-specific chaperone A (tubulin-folding cofactor A) (cfa), putative
nr
ID XP_002523979.1
description tubulin-specific chaperone A (tubulin-folding cofactor A) (cfa), putative [Ricinus communis]
swissprot
ID O04350
description Tubulin-folding cofactor A OS=Arabidopsis thaliana GN=TFCA PE=1 SV=2
trembl
ID B9SDB0
description Tubulin-specific chaperone A (Tubulin-folding cofactor A) (Cfa), putative OS=Ricinus communis GN=RCOM_1515760 PE=4 SV=1
Gene Ontology
ID GO:0005829
description tubulin-folding cofactor a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45064: 60513-64654 , PASA_asmbl_45065: 61230-61586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004871_080 0.0 - - tubulin-specific chaperone A (tubulin-folding cofactor A) (cfa), putative [Ricinus communis]
2 Hb_001437_060 0.0983836999 - - PREDICTED: uncharacterized protein LOC105628058 [Jatropha curcas]
3 Hb_001584_190 0.1026123468 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
4 Hb_066768_010 0.1116281273 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_001047_240 0.1148434652 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
6 Hb_010042_010 0.1157061458 - - Urease accessory protein ureD, putative [Ricinus communis]
7 Hb_076693_030 0.120205076 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
8 Hb_003697_030 0.1216243818 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
9 Hb_002596_040 0.1236617105 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
10 Hb_004784_020 0.1242293408 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
11 Hb_004668_020 0.1254974188 - - PREDICTED: uncharacterized protein LOC105630444 isoform X2 [Jatropha curcas]
12 Hb_000479_190 0.1258640901 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001124_090 0.1263364384 - - acyl carrier protein, putative [Ricinus communis]
14 Hb_001575_090 0.127105319 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
15 Hb_000656_040 0.1277294479 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
16 Hb_000028_350 0.1281081567 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
17 Hb_000331_450 0.1282794981 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
18 Hb_000221_160 0.1293559902 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
19 Hb_033594_150 0.1319910682 - - unknown [Lotus japonicus]
20 Hb_000317_390 0.1324892006 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]

Gene co-expression network

sample Hb_004871_080 Hb_004871_080 Hb_001437_060 Hb_001437_060 Hb_004871_080--Hb_001437_060 Hb_001584_190 Hb_001584_190 Hb_004871_080--Hb_001584_190 Hb_066768_010 Hb_066768_010 Hb_004871_080--Hb_066768_010 Hb_001047_240 Hb_001047_240 Hb_004871_080--Hb_001047_240 Hb_010042_010 Hb_010042_010 Hb_004871_080--Hb_010042_010 Hb_076693_030 Hb_076693_030 Hb_004871_080--Hb_076693_030 Hb_024650_070 Hb_024650_070 Hb_001437_060--Hb_024650_070 Hb_000317_390 Hb_000317_390 Hb_001437_060--Hb_000317_390 Hb_005054_210 Hb_005054_210 Hb_001437_060--Hb_005054_210 Hb_000028_350 Hb_000028_350 Hb_001437_060--Hb_000028_350 Hb_006816_260 Hb_006816_260 Hb_001437_060--Hb_006816_260 Hb_000479_190 Hb_000479_190 Hb_001584_190--Hb_000479_190 Hb_012799_160 Hb_012799_160 Hb_001584_190--Hb_012799_160 Hb_000331_450 Hb_000331_450 Hb_001584_190--Hb_000331_450 Hb_002759_060 Hb_002759_060 Hb_001584_190--Hb_002759_060 Hb_001584_190--Hb_010042_010 Hb_006846_060 Hb_006846_060 Hb_001584_190--Hb_006846_060 Hb_004784_020 Hb_004784_020 Hb_066768_010--Hb_004784_020 Hb_001250_060 Hb_001250_060 Hb_066768_010--Hb_001250_060 Hb_031089_040 Hb_031089_040 Hb_066768_010--Hb_031089_040 Hb_000326_090 Hb_000326_090 Hb_066768_010--Hb_000326_090 Hb_000083_170 Hb_000083_170 Hb_066768_010--Hb_000083_170 Hb_005867_020 Hb_005867_020 Hb_066768_010--Hb_005867_020 Hb_001047_240--Hb_076693_030 Hb_007875_030 Hb_007875_030 Hb_001047_240--Hb_007875_030 Hb_001047_240--Hb_004784_020 Hb_004162_210 Hb_004162_210 Hb_001047_240--Hb_004162_210 Hb_001047_240--Hb_000331_450 Hb_001318_250 Hb_001318_250 Hb_001047_240--Hb_001318_250 Hb_015807_040 Hb_015807_040 Hb_010042_010--Hb_015807_040 Hb_010042_010--Hb_000331_450 Hb_001461_010 Hb_001461_010 Hb_010042_010--Hb_001461_010 Hb_065525_020 Hb_065525_020 Hb_010042_010--Hb_065525_020 Hb_000934_250 Hb_000934_250 Hb_010042_010--Hb_000934_250 Hb_008544_010 Hb_008544_010 Hb_010042_010--Hb_008544_010 Hb_002596_040 Hb_002596_040 Hb_076693_030--Hb_002596_040 Hb_001824_010 Hb_001824_010 Hb_076693_030--Hb_001824_010 Hb_008695_040 Hb_008695_040 Hb_076693_030--Hb_008695_040 Hb_076693_030--Hb_007875_030 Hb_007735_030 Hb_007735_030 Hb_076693_030--Hb_007735_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83323 1.23524 7.57517 13.9689 8.16974 12.768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0866 12.7048 11.8319 9.98018 3.01931

CAGE analysis