Hb_004875_010

Information

Type -
Description -
Location Contig4875: 28018-30947
Sequence    

Annotation

kegg
ID rcu:RCOM_1687030
description Aquaporin PIP1.3, putative
nr
ID ACV66985.1
description plasma membrane aquaporin 1 [Hevea brasiliensis]
swissprot
ID Q7XSQ9
description Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3
trembl
ID C9EA48
description Plasma membrane aquaporin 1 OS=Hevea brasiliensis GN=PIP1 PE=2 SV=1
Gene Ontology
ID GO:0016020
description plasma membrane intrinsic protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004875_010 0.0 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
2 Hb_014720_030 0.0970066466 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
3 Hb_000922_220 0.1026958624 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
4 Hb_122273_020 0.1119160503 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
5 Hb_000649_270 0.114177687 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
6 Hb_002005_030 0.1153835057 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
7 Hb_005772_030 0.1169854159 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
8 Hb_001054_120 0.120004119 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
9 Hb_119600_050 0.1218271532 - - sugar transporter, putative [Ricinus communis]
10 Hb_001103_090 0.1256299385 - - PREDICTED: patellin-3 [Populus euphratica]
11 Hb_001269_050 0.1257266021 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
12 Hb_000434_010 0.1275923994 - - PREDICTED: protein starmaker [Jatropha curcas]
13 Hb_000358_100 0.127892102 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
14 Hb_002809_160 0.1303250122 - - PREDICTED: protein FAM63A [Jatropha curcas]
15 Hb_000260_780 0.1306405579 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
16 Hb_001646_010 0.1306683508 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
17 Hb_000334_130 0.1317581254 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
18 Hb_001998_220 0.133236629 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
19 Hb_005181_040 0.1333761272 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
20 Hb_001226_110 0.1336886465 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]

Gene co-expression network

sample Hb_004875_010 Hb_004875_010 Hb_014720_030 Hb_014720_030 Hb_004875_010--Hb_014720_030 Hb_000922_220 Hb_000922_220 Hb_004875_010--Hb_000922_220 Hb_122273_020 Hb_122273_020 Hb_004875_010--Hb_122273_020 Hb_000649_270 Hb_000649_270 Hb_004875_010--Hb_000649_270 Hb_002005_030 Hb_002005_030 Hb_004875_010--Hb_002005_030 Hb_005772_030 Hb_005772_030 Hb_004875_010--Hb_005772_030 Hb_001226_110 Hb_001226_110 Hb_014720_030--Hb_001226_110 Hb_001269_050 Hb_001269_050 Hb_014720_030--Hb_001269_050 Hb_014720_030--Hb_122273_020 Hb_001103_090 Hb_001103_090 Hb_014720_030--Hb_001103_090 Hb_005000_090 Hb_005000_090 Hb_014720_030--Hb_005000_090 Hb_000922_220--Hb_122273_020 Hb_002804_030 Hb_002804_030 Hb_000922_220--Hb_002804_030 Hb_000434_010 Hb_000434_010 Hb_000922_220--Hb_000434_010 Hb_002918_320 Hb_002918_320 Hb_000922_220--Hb_002918_320 Hb_172421_010 Hb_172421_010 Hb_000922_220--Hb_172421_010 Hb_001054_120 Hb_001054_120 Hb_122273_020--Hb_001054_120 Hb_000243_400 Hb_000243_400 Hb_122273_020--Hb_000243_400 Hb_122273_020--Hb_002918_320 Hb_000413_250 Hb_000413_250 Hb_122273_020--Hb_000413_250 Hb_000649_270--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_000649_270--Hb_001675_320 Hb_000260_780 Hb_000260_780 Hb_000649_270--Hb_000260_780 Hb_150346_010 Hb_150346_010 Hb_000649_270--Hb_150346_010 Hb_023765_010 Hb_023765_010 Hb_000649_270--Hb_023765_010 Hb_000172_340 Hb_000172_340 Hb_002005_030--Hb_000172_340 Hb_006907_140 Hb_006907_140 Hb_002005_030--Hb_006907_140 Hb_001341_160 Hb_001341_160 Hb_002005_030--Hb_001341_160 Hb_000010_420 Hb_000010_420 Hb_002005_030--Hb_000010_420 Hb_001904_030 Hb_001904_030 Hb_002005_030--Hb_001904_030 Hb_007245_020 Hb_007245_020 Hb_002005_030--Hb_007245_020 Hb_000984_140 Hb_000984_140 Hb_005772_030--Hb_000984_140 Hb_002809_160 Hb_002809_160 Hb_005772_030--Hb_002809_160 Hb_004204_210 Hb_004204_210 Hb_005772_030--Hb_004204_210 Hb_012353_040 Hb_012353_040 Hb_005772_030--Hb_012353_040 Hb_002025_270 Hb_002025_270 Hb_005772_030--Hb_002025_270 Hb_009078_020 Hb_009078_020 Hb_005772_030--Hb_009078_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.5639 357.952 183.158 292.989 220.594 139.664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.2778 14.8625 43.7893 214.469 322.244

CAGE analysis