Hb_004880_020

Information

Type -
Description -
Location Contig4880: 47855-51398
Sequence    

Annotation

kegg
ID cit:102615712
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1-like
nr
ID XP_012075831.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
swissprot
ID O81833
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1
trembl
ID A0A067G412
description Serine/threonine-protein kinase OS=Citrus sinensis GN=CISIN_1g003832mg PE=3 SV=1
Gene Ontology
ID GO:0005622
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45090: 47881-51308 , PASA_asmbl_45091: 47881-49111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004880_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
2 Hb_000077_020 0.0223024135 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009225_060 0.0313080246 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
4 Hb_003734_070 0.0434375526 - - chlorophyll A/B binding protein, putative [Ricinus communis]
5 Hb_009233_020 0.0436748941 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
6 Hb_068580_010 0.0530930476 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
7 Hb_001426_020 0.0699850331 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
8 Hb_004993_020 0.0714249711 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
9 Hb_009588_010 0.0729458062 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
10 Hb_000487_080 0.0736501512 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
11 Hb_003086_140 0.0756862319 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
12 Hb_001507_060 0.077564645 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
13 Hb_126714_010 0.0776770382 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
14 Hb_006588_140 0.0780921392 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
15 Hb_085682_010 0.0798812775 - - -
16 Hb_001031_140 0.082038216 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
17 Hb_002328_080 0.0828184302 - - short-chain dehydrogenase, putative [Ricinus communis]
18 Hb_000557_070 0.0832707988 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
19 Hb_004807_010 0.0844289774 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
20 Hb_189208_070 0.0845957878 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004880_020 Hb_004880_020 Hb_000077_020 Hb_000077_020 Hb_004880_020--Hb_000077_020 Hb_009225_060 Hb_009225_060 Hb_004880_020--Hb_009225_060 Hb_003734_070 Hb_003734_070 Hb_004880_020--Hb_003734_070 Hb_009233_020 Hb_009233_020 Hb_004880_020--Hb_009233_020 Hb_068580_010 Hb_068580_010 Hb_004880_020--Hb_068580_010 Hb_001426_020 Hb_001426_020 Hb_004880_020--Hb_001426_020 Hb_000077_020--Hb_009233_020 Hb_000077_020--Hb_009225_060 Hb_000077_020--Hb_003734_070 Hb_000077_020--Hb_068580_010 Hb_001507_060 Hb_001507_060 Hb_000077_020--Hb_001507_060 Hb_009225_060--Hb_009233_020 Hb_009225_060--Hb_003734_070 Hb_085682_010 Hb_085682_010 Hb_009225_060--Hb_085682_010 Hb_006588_140 Hb_006588_140 Hb_009225_060--Hb_006588_140 Hb_003734_070--Hb_068580_010 Hb_009588_010 Hb_009588_010 Hb_003734_070--Hb_009588_010 Hb_003734_070--Hb_009233_020 Hb_009233_020--Hb_085682_010 Hb_000329_120 Hb_000329_120 Hb_009233_020--Hb_000329_120 Hb_004993_020 Hb_004993_020 Hb_068580_010--Hb_004993_020 Hb_000557_070 Hb_000557_070 Hb_068580_010--Hb_000557_070 Hb_000731_150 Hb_000731_150 Hb_068580_010--Hb_000731_150 Hb_000487_080 Hb_000487_080 Hb_001426_020--Hb_000487_080 Hb_016734_100 Hb_016734_100 Hb_001426_020--Hb_016734_100 Hb_001642_020 Hb_001642_020 Hb_001426_020--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_001426_020--Hb_001031_140 Hb_163566_010 Hb_163566_010 Hb_001426_020--Hb_163566_010 Hb_005833_010 Hb_005833_010 Hb_001426_020--Hb_005833_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0583548 38.0751 32.7767 0 0.0126859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0144752 50.0982

CAGE analysis