Hb_004880_040

Information

Type -
Description -
Location Contig4880: 82037-85655
Sequence    

Annotation

kegg
ID rcu:RCOM_0206830
description S-locus-specific glycoprotein S6 precursor, putative (EC:2.7.11.25)
nr
ID XP_012070686.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
swissprot
ID Q09092
description Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. viridis GN=SRK6 PE=2 SV=2
trembl
ID A0A067L392
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_00727 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45093: 82704-83661 , PASA_asmbl_45094: 84241-84715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004880_040 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
2 Hb_003185_040 0.0667269138 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
3 Hb_105377_010 0.0776998605 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
4 Hb_003598_020 0.0846199086 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
5 Hb_001856_210 0.0892860868 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
6 Hb_000878_080 0.0954158391 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
7 Hb_003085_070 0.0990210667 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
8 Hb_000445_260 0.1045442881 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
9 Hb_005731_040 0.1046301347 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
10 Hb_011861_130 0.1092248162 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
11 Hb_004724_280 0.1098770796 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003464_010 0.1107901814 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001123_330 0.1122748553 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
14 Hb_007474_010 0.1132651245 - - vacuolar invertase [Manihot esculenta]
15 Hb_097292_010 0.1159654922 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
16 Hb_000336_010 0.1187934687 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
17 Hb_003006_070 0.1219669103 - - aquaporin [Manihot esculenta]
18 Hb_002836_110 0.1224801325 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
19 Hb_001329_050 0.124472254 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006198_100 0.1262827893 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004880_040 Hb_004880_040 Hb_003185_040 Hb_003185_040 Hb_004880_040--Hb_003185_040 Hb_105377_010 Hb_105377_010 Hb_004880_040--Hb_105377_010 Hb_003598_020 Hb_003598_020 Hb_004880_040--Hb_003598_020 Hb_001856_210 Hb_001856_210 Hb_004880_040--Hb_001856_210 Hb_000878_080 Hb_000878_080 Hb_004880_040--Hb_000878_080 Hb_003085_070 Hb_003085_070 Hb_004880_040--Hb_003085_070 Hb_000059_190 Hb_000059_190 Hb_003185_040--Hb_000059_190 Hb_003185_040--Hb_003085_070 Hb_001123_330 Hb_001123_330 Hb_003185_040--Hb_001123_330 Hb_000336_010 Hb_000336_010 Hb_003185_040--Hb_000336_010 Hb_003185_040--Hb_105377_010 Hb_105377_010--Hb_003598_020 Hb_105377_010--Hb_000336_010 Hb_004724_280 Hb_004724_280 Hb_105377_010--Hb_004724_280 Hb_005731_040 Hb_005731_040 Hb_105377_010--Hb_005731_040 Hb_003598_020--Hb_005731_040 Hb_097292_010 Hb_097292_010 Hb_003598_020--Hb_097292_010 Hb_089040_010 Hb_089040_010 Hb_003598_020--Hb_089040_010 Hb_003598_020--Hb_001856_210 Hb_000445_260 Hb_000445_260 Hb_001856_210--Hb_000445_260 Hb_174639_010 Hb_174639_010 Hb_001856_210--Hb_174639_010 Hb_010080_050 Hb_010080_050 Hb_001856_210--Hb_010080_050 Hb_001856_210--Hb_000878_080 Hb_009113_020 Hb_009113_020 Hb_001856_210--Hb_009113_020 Hb_002028_270 Hb_002028_270 Hb_000878_080--Hb_002028_270 Hb_000878_080--Hb_097292_010 Hb_002894_060 Hb_002894_060 Hb_000878_080--Hb_002894_060 Hb_002203_010 Hb_002203_010 Hb_000878_080--Hb_002203_010 Hb_004005_060 Hb_004005_060 Hb_000878_080--Hb_004005_060 Hb_003006_070 Hb_003006_070 Hb_003085_070--Hb_003006_070 Hb_001623_250 Hb_001623_250 Hb_003085_070--Hb_001623_250 Hb_002836_110 Hb_002836_110 Hb_003085_070--Hb_002836_110 Hb_006614_020 Hb_006614_020 Hb_003085_070--Hb_006614_020 Hb_000375_220 Hb_000375_220 Hb_003085_070--Hb_000375_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113243 2.8515 3.31971 0 0.00752433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0142621 0 0.0169936 0.363594

CAGE analysis