Hb_004880_120

Information

Type -
Description -
Location Contig4880: 167526-167876
Sequence    

Annotation

kegg
ID rcu:RCOM_0209560
description ccd1, putative
nr
ID XP_012071184.1
description PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
swissprot
ID Q9LSQ6
description Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1
trembl
ID A0A067L4E4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00726 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein pbp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004880_120 0.0 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
2 Hb_000230_250 0.11692421 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
3 Hb_137701_020 0.1276151527 - - putative protein kinase [Oryza sativa Japonica Group]
4 Hb_010175_050 0.1450863511 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
5 Hb_063869_010 0.1481005688 - - JHL22C18.10 [Jatropha curcas]
6 Hb_005772_020 0.1493291406 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
7 Hb_004007_210 0.1579655562 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
8 Hb_012807_070 0.161379501 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
9 Hb_008341_010 0.1625944888 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
10 Hb_000112_040 0.1670518989 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_171900_110 0.1694647366 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
12 Hb_005240_010 0.1711388092 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
13 Hb_001631_110 0.172588905 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
14 Hb_000032_590 0.1732173233 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
15 Hb_005183_060 0.1734459476 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
16 Hb_017098_020 0.174087584 - - Zinc finger protein GIS2 [Medicago truncatula]
17 Hb_019026_040 0.1805641796 - - S-locus lectin protein kinase family protein [Theobroma cacao]
18 Hb_005054_320 0.1806315656 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
19 Hb_008225_020 0.1819277474 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
20 Hb_004176_090 0.186181147 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]

Gene co-expression network

sample Hb_004880_120 Hb_004880_120 Hb_000230_250 Hb_000230_250 Hb_004880_120--Hb_000230_250 Hb_137701_020 Hb_137701_020 Hb_004880_120--Hb_137701_020 Hb_010175_050 Hb_010175_050 Hb_004880_120--Hb_010175_050 Hb_063869_010 Hb_063869_010 Hb_004880_120--Hb_063869_010 Hb_005772_020 Hb_005772_020 Hb_004880_120--Hb_005772_020 Hb_004007_210 Hb_004007_210 Hb_004880_120--Hb_004007_210 Hb_000230_250--Hb_005772_020 Hb_000230_250--Hb_010175_050 Hb_010180_050 Hb_010180_050 Hb_000230_250--Hb_010180_050 Hb_000230_250--Hb_004007_210 Hb_000032_590 Hb_000032_590 Hb_000230_250--Hb_000032_590 Hb_137701_020--Hb_063869_010 Hb_005183_060 Hb_005183_060 Hb_137701_020--Hb_005183_060 Hb_004176_090 Hb_004176_090 Hb_137701_020--Hb_004176_090 Hb_042141_010 Hb_042141_010 Hb_137701_020--Hb_042141_010 Hb_007507_030 Hb_007507_030 Hb_137701_020--Hb_007507_030 Hb_008341_010 Hb_008341_010 Hb_010175_050--Hb_008341_010 Hb_010175_050--Hb_005772_020 Hb_019026_040 Hb_019026_040 Hb_010175_050--Hb_019026_040 Hb_004241_170 Hb_004241_170 Hb_010175_050--Hb_004241_170 Hb_003811_030 Hb_003811_030 Hb_010175_050--Hb_003811_030 Hb_063869_010--Hb_042141_010 Hb_000205_220 Hb_000205_220 Hb_063869_010--Hb_000205_220 Hb_052764_010 Hb_052764_010 Hb_063869_010--Hb_052764_010 Hb_063869_010--Hb_007507_030 Hb_005240_010 Hb_005240_010 Hb_005772_020--Hb_005240_010 Hb_005772_020--Hb_000032_590 Hb_006358_030 Hb_006358_030 Hb_005772_020--Hb_006358_030 Hb_171900_110 Hb_171900_110 Hb_005772_020--Hb_171900_110 Hb_004007_210--Hb_019026_040 Hb_005054_320 Hb_005054_320 Hb_004007_210--Hb_005054_320 Hb_004007_210--Hb_010175_050 Hb_004007_210--Hb_005772_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21796 20.2843 10.5542 0.807569 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.633244 19.4527

CAGE analysis