Hb_004880_140

Information

Type transcription factor
Description TF Family: Orphans
Location Contig4880: 173734-175126
Sequence    

Annotation

kegg
ID rcu:RCOM_1256550
description transcription factor, putative
nr
ID XP_012070683.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
swissprot
ID Q9LJB7
description B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1
trembl
ID A0A067KVE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00725 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45099: 173764-175098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004880_140 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
2 Hb_000904_080 0.0651369056 - - alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
3 Hb_007441_110 0.11301876 - - PREDICTED: F-box/LRR-repeat protein At3g58900-like [Jatropha curcas]
4 Hb_004228_030 0.1232088196 - - unnamed protein product [Coffea canephora]
5 Hb_001437_080 0.1296948674 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
6 Hb_002272_020 0.1329428296 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
7 Hb_000307_190 0.1333513744 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Populus euphratica]
8 Hb_011512_080 0.1342329526 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
9 Hb_000002_240 0.1352174081 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
10 Hb_000130_240 0.1358290965 - - hypothetical protein RCOM_1520720 [Ricinus communis]
11 Hb_002234_100 0.1363336608 - - F-box family protein, putative isoform 1 [Theobroma cacao]
12 Hb_002272_080 0.1373221184 - - -
13 Hb_002228_110 0.1409850799 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
14 Hb_000111_180 0.1412021959 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
15 Hb_003299_030 0.1417864576 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
16 Hb_011512_120 0.1418407822 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
17 Hb_005675_040 0.1423718913 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
18 Hb_000905_210 0.1439875677 - - PREDICTED: protein gar2 [Jatropha curcas]
19 Hb_153553_030 0.1441606156 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
20 Hb_003621_020 0.1469262226 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]

Gene co-expression network

sample Hb_004880_140 Hb_004880_140 Hb_000904_080 Hb_000904_080 Hb_004880_140--Hb_000904_080 Hb_007441_110 Hb_007441_110 Hb_004880_140--Hb_007441_110 Hb_004228_030 Hb_004228_030 Hb_004880_140--Hb_004228_030 Hb_001437_080 Hb_001437_080 Hb_004880_140--Hb_001437_080 Hb_002272_020 Hb_002272_020 Hb_004880_140--Hb_002272_020 Hb_000307_190 Hb_000307_190 Hb_004880_140--Hb_000307_190 Hb_000904_080--Hb_000307_190 Hb_000904_080--Hb_007441_110 Hb_011512_120 Hb_011512_120 Hb_000904_080--Hb_011512_120 Hb_000904_080--Hb_004228_030 Hb_000130_240 Hb_000130_240 Hb_000904_080--Hb_000130_240 Hb_001410_020 Hb_001410_020 Hb_007441_110--Hb_001410_020 Hb_000260_180 Hb_000260_180 Hb_007441_110--Hb_000260_180 Hb_006588_210 Hb_006588_210 Hb_007441_110--Hb_006588_210 Hb_007441_110--Hb_000130_240 Hb_021576_110 Hb_021576_110 Hb_007441_110--Hb_021576_110 Hb_000087_060 Hb_000087_060 Hb_007441_110--Hb_000087_060 Hb_003581_070 Hb_003581_070 Hb_004228_030--Hb_003581_070 Hb_005675_040 Hb_005675_040 Hb_004228_030--Hb_005675_040 Hb_000373_150 Hb_000373_150 Hb_004228_030--Hb_000373_150 Hb_000125_170 Hb_000125_170 Hb_004228_030--Hb_000125_170 Hb_004228_030--Hb_000130_240 Hb_005207_050 Hb_005207_050 Hb_004228_030--Hb_005207_050 Hb_000120_330 Hb_000120_330 Hb_001437_080--Hb_000120_330 Hb_005116_060 Hb_005116_060 Hb_001437_080--Hb_005116_060 Hb_002234_100 Hb_002234_100 Hb_001437_080--Hb_002234_100 Hb_001030_020 Hb_001030_020 Hb_001437_080--Hb_001030_020 Hb_000856_380 Hb_000856_380 Hb_001437_080--Hb_000856_380 Hb_005306_190 Hb_005306_190 Hb_001437_080--Hb_005306_190 Hb_111198_010 Hb_111198_010 Hb_002272_020--Hb_111198_010 Hb_000076_160 Hb_000076_160 Hb_002272_020--Hb_000076_160 Hb_003299_030 Hb_003299_030 Hb_002272_020--Hb_003299_030 Hb_002078_220 Hb_002078_220 Hb_002272_020--Hb_002078_220 Hb_003117_020 Hb_003117_020 Hb_002272_020--Hb_003117_020 Hb_001946_040 Hb_001946_040 Hb_002272_020--Hb_001946_040 Hb_000307_190--Hb_000130_240 Hb_000915_060 Hb_000915_060 Hb_000307_190--Hb_000915_060 Hb_005137_050 Hb_005137_050 Hb_000307_190--Hb_005137_050 Hb_000256_140 Hb_000256_140 Hb_000307_190--Hb_000256_140 Hb_002411_030 Hb_002411_030 Hb_000307_190--Hb_002411_030 Hb_000307_190--Hb_003117_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.929 110.821 59.3259 32.646 46.3267 68.0305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8508 103.307 28.2137 28.1529 17.2851

CAGE analysis