Hb_004881_020

Information

Type -
Description -
Location Contig4881: 20533-28534
Sequence    

Annotation

kegg
ID rcu:RCOM_0385670
description serine/threonine-protein kinase rio2, putative (EC:2.7.11.1)
nr
ID XP_012081902.1
description PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
swissprot
ID Q54T05
description Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum GN=rio2 PE=3 SV=1
trembl
ID A0A067JZY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19249 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase rio2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45105: 20512-25413 , PASA_asmbl_45106: 25711-26069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004881_020 0.0 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
2 Hb_007594_130 0.0389057155 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
3 Hb_003952_070 0.055766465 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_006252_040 0.0594509871 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
5 Hb_000212_240 0.0626674829 - - short-chain dehydrogenase, putative [Ricinus communis]
6 Hb_103012_010 0.0688760488 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
7 Hb_002671_100 0.0704538619 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
8 Hb_002045_240 0.0726509665 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
9 Hb_005291_030 0.0739838213 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
10 Hb_003641_060 0.073993281 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
11 Hb_000030_190 0.0744554361 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
12 Hb_001946_010 0.0750029434 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_000538_100 0.0755453834 - - conserved hypothetical protein [Ricinus communis]
14 Hb_040262_010 0.0764716244 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
15 Hb_000526_050 0.078695345 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
16 Hb_007317_110 0.0789367856 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
17 Hb_002716_130 0.079557302 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
18 Hb_001489_150 0.0799381317 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
19 Hb_144598_030 0.0806885581 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
20 Hb_023386_040 0.0821605612 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]

Gene co-expression network

sample Hb_004881_020 Hb_004881_020 Hb_007594_130 Hb_007594_130 Hb_004881_020--Hb_007594_130 Hb_003952_070 Hb_003952_070 Hb_004881_020--Hb_003952_070 Hb_006252_040 Hb_006252_040 Hb_004881_020--Hb_006252_040 Hb_000212_240 Hb_000212_240 Hb_004881_020--Hb_000212_240 Hb_103012_010 Hb_103012_010 Hb_004881_020--Hb_103012_010 Hb_002671_100 Hb_002671_100 Hb_004881_020--Hb_002671_100 Hb_007594_130--Hb_003952_070 Hb_007594_130--Hb_002671_100 Hb_007594_130--Hb_000212_240 Hb_003030_070 Hb_003030_070 Hb_007594_130--Hb_003030_070 Hb_040262_010 Hb_040262_010 Hb_007594_130--Hb_040262_010 Hb_003952_070--Hb_006252_040 Hb_000538_100 Hb_000538_100 Hb_003952_070--Hb_000538_100 Hb_005276_210 Hb_005276_210 Hb_003952_070--Hb_005276_210 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_000212_240--Hb_006252_040 Hb_002716_130 Hb_002716_130 Hb_000212_240--Hb_002716_130 Hb_000025_110 Hb_000025_110 Hb_000212_240--Hb_000025_110 Hb_004117_130 Hb_004117_130 Hb_000212_240--Hb_004117_130 Hb_000606_090 Hb_000606_090 Hb_000212_240--Hb_000606_090 Hb_001946_010 Hb_001946_010 Hb_103012_010--Hb_001946_010 Hb_000260_170 Hb_000260_170 Hb_103012_010--Hb_000260_170 Hb_103012_010--Hb_000538_100 Hb_007317_110 Hb_007317_110 Hb_103012_010--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_103012_010--Hb_011930_160 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240 Hb_002671_100--Hb_040262_010 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_002671_100--Hb_004117_130 Hb_002671_100--Hb_000260_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7632 10.3308 7.28022 11.4076 14.8108 22.0243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9783 11.348 7.32549 9.96071 6.69285

CAGE analysis